NEWS.md

In mgi.report.reader: Read Mouse Genome Informatics Reports

mgi.report.reader 0.1.3

• Added marker_type_definitions data set.
• Renamed update_marker_symbol() to symbol_to_symbol().
• Renamed convert_to_marker_id() to symbol_to_identifier().
• symbol_to_symbol() and symbol_to_identifier() use data table backend with keyed column for improved look-up performance.
• Mappings from symbols to symbols/identifiers is backed up by memoised functions making interactive experience a bit nicer.
• Added bundled tiny examples of MRK_List1.rpt, accessible with report_example(), for examples and unit tests.
• Renamed open_marker_in_mgi() to open_marker_id_in_mgi(), and added open_marker_symbol_in_mgi().

mgi.report.reader 0.1.2

• Fix a bug in create_symbol_mapping() and create_id_mapping() regarding the removal of rows that appear more than once, but that are effectively the same mapping.

mgi.report.reader 0.1.1

• Fix a bug in create_symbol_mapping() and create_id_mapping() regarding the removal of rows that appear more than once, i.e. rows that correspond to unresolvable mappings.

mgi.report.reader 0.1.0

• Extensive documentation for supported MGI reports.
• More flexible interface for read_report().
• Report data is now accompanied by attributes providing report last modification date and source: report_last_modified() and report_source().
• Marker crosswalks from old symbols: update_marker_symbol() and convert_to_marker_id().
• New helper to quickly browse information about an MGI marker: open_marker_in_mgi().

mgi.report.reader 0.0.1

• Initial CRAN submission.

mgi.report.reader documentation built on Sept. 11, 2024, 8:41 p.m.