mhtboot: Multiple Hypothesis Test Based on Distribution of p Values
Version 1.3.3

A framework for multiple hypothesis testing based on distribution of p values. It is well known that the p values come from different distribution for null and alternatives, in this package we provide functions to detect that change. We provide a method for using the change in distribution of p values as a way to detect the true signals in the data.

AuthorAbhirup Mallik [aut, cre]
Date of publication2016-10-30 22:14:24
MaintainerAbhirup Mallik <malli066@umn.edu>
LicenseGPL-3
Version1.3.3
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("mhtboot")

Popular man pages

datgen: datgen
hitplots: Plot area under p value cdf below a cutoff.
pboot.1sample: Generate Bootstrap Distribution of p values for one sample...
pboot.1sample.s: Generate p value distributions and estimate of sample...
pboot.2sample: Generate bootstrap distribution of p values based on user...
plotchange: plotchange
ptrans: Transformation of order statistics of the p value...
See all...

All man pages Function index File listing

Man pages

datgen: datgen
elbow: Finding corner of a vector of ordered transformed p values
hitplots: Plot area under p value cdf below a cutoff.
mht.1sample: Multiple hypothesis testing based on p value distribution for...
mhtboot: mhtboot: A package for multiple hypothesis testing using...
pboot.1sample: Generate Bootstrap Distribution of p values for one sample...
pboot.1sample.s: Generate p value distributions and estimate of sample...
pboot.2sample: Generate bootstrap distribution of p values based on user...
plotchange: plotchange
plotpboot: Quantile plots for p value distributions.
ptrans: Transformation of order statistics of the p value...
qelbow: Finding corner of a quantile of ordered transformed p values

Functions

datgen Man page Source code
difave Source code
diflm Source code
elbow Man page Source code
hitplots Man page Source code
lave Source code
llm Source code
mht.1sample Man page Source code
mhtboot Man page
mhtboot-package Man page
pboot.1sample Man page Source code
pboot.1sample.s Man page Source code
pboot.2sample Man page Source code
plotchange Man page Source code
plotpboot Man page Source code
ptrans Man page Source code
qelbow Man page Source code
rave Source code
rlm Source code

Files

inst
inst/doc
inst/doc/vignette1.Rnw
inst/doc/vignette1.R
inst/doc/vignette1.pdf
NAMESPACE
R
R/mhtboot.R
R/simulationfunctions.R
R/mhtfunctions.R
R/changefunctions.R
R/bootfunctions.R
vignettes
vignettes/vignette1.Rnw
vignettes/vignette1-concordance.tex
MD5
build
build/vignette.rds
DESCRIPTION
man
man/mhtboot.Rd
man/qelbow.Rd
man/hitplots.Rd
man/ptrans.Rd
man/pboot.2sample.Rd
man/pboot.1sample.Rd
man/elbow.Rd
man/plotchange.Rd
man/pboot.1sample.s.Rd
man/mht.1sample.Rd
man/datgen.Rd
man/plotpboot.Rd
mhtboot documentation built on May 19, 2017, 8:28 p.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.