micompr: Multivariate Independent Comparison of Observations
Version 1.0.1

A procedure for comparing multivariate samples associated with different groups. It uses principal component analysis to convert multivariate observations into a set of linearly uncorrelated statistical measures, which are then compared using a number of statistical methods. The procedure is independent of the distributional properties of samples and automatically selects features that best explain their differences, avoiding manual selection of specific points or summary statistics. It is appropriate for comparing samples of time series, images, spectrometric measures or similar multivariate observations.

Browse man pages Browse package API and functions Browse package files

AuthorNuno Fachada [aut, cre]
Date of publication2016-08-04 21:56:52
MaintainerNuno Fachada <faken@fakenmc.com>
LicenseMIT + file LICENSE
Version1.0.1
URL http://github.com/fakenmc/micompr
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("micompr")

Man pages

assumptions: Parametric tests assumptions
assumptions.cmpoutput: Get assumptions for parametric tests performed on output...
assumptions_manova: Determine the assumptions for the MANOVA test
assumptions.micomp: Get assumptions for parametric tests performed on each...
assumptions_paruv: Determine the assumptions for the parametric comparison test
centerscale: Center and scale vector
cmpoutput: Compares output observations from two or more groups
concat_outputs: Concatenate multiple outputs with multiple observations
grpoutputs: Load and group outputs from files
micomp: Multiple independent comparisons of observations
micompr: micompr: multivariate independent comparison of observations
plot.assumptions_cmpoutput: Plot _p_-values for testing the assumptions of the parametric...
plot.assumptions_manova: Plot _p_-values for testing the multivariate normality...
plot.assumptions_micomp: Plot _p_-values for testing the assumptions of the parametric...
plot.assumptions_paruv: Plot _p_-values for testing the assumptions of the parametric...
plot.cmpoutput: Plot comparison of an output
plotcols: Default colors for plots in 'micomp' package
plot.grpoutputs: Plot grouped outputs
plot.micomp: Plot projection of output observations on the first two...
pphpc_diff: Data from two implementations of the PPHPC model, one of...
pphpc_noshuff: Data from two implementations of the PPHPC model, one of...
pphpc_ok: Data from two similar implementations of the PPHPC model
pphpc_testvlo: Data for testing variable length outputs
print.assumptions_cmpoutput: Print method for the assumptions of parametric tests used in...
print.assumptions_manova: Print information about the assumptions of the MANOVA test
print.assumptions_micomp: Print information about the assumptions concerning the...
print.assumptions_paruv: Print information about the assumptions of the parametric...
print.cmpoutput: Print information about comparison of an output
print.grpoutputs: Print information about grouped outputs
print.micomp: Print information about multiple comparisons of outputs
pst: Concatenate strings without any separator characters
pvalcol: Associate colors to _p_-values
pvalf: Format p-values
pvalf.default: Default p-value formatting method
summary.assumptions_cmpoutput: Summary method for the assumptions of parametric tests used...
summary.assumptions_micomp: Summary method for the assumptions of parametric tests used...
summary.cmpoutput: Summary method for comparison of an output
summary.grpoutputs: Summary method for grouped outputs
summary.micomp: Summary method for multiple comparisons of outputs
tikzscat: Simple 'TikZ' scatter plot
toLatex.cmpoutput: Convert 'cmpoutput' object to 'LaTeX' table
toLatex.micomp: Convert 'micomp' object to 'LaTeX' table
tscat_apply: Multiple 'TikZ' 2D scatter plots for a list of output...

Functions

assumptions Man page Source code
assumptions.cmpoutput Man page Source code
assumptions.micomp Man page Source code
assumptions_manova Man page Source code
assumptions_paruv Man page Source code
centerscale Man page Source code
cmpoutput Man page Source code
concat_outputs Man page Source code
grpoutputs Man page Source code
micomp Man page Source code
micompr Man page
micompr-package Man page
plot.assumptions_cmpoutput Man page Source code
plot.assumptions_manova Man page Source code
plot.assumptions_micomp Man page Source code
plot.assumptions_paruv Man page Source code
plot.cmpoutput Man page Source code
plot.grpoutputs Man page Source code
plot.micomp Man page Source code
plotcols Man page Source code
pphpc_diff Man page
pphpc_noshuff Man page
pphpc_ok Man page
pphpc_testvlo Man page
print.assumptions_cmpoutput Man page Source code
print.assumptions_manova Man page Source code
print.assumptions_micomp Man page Source code
print.assumptions_paruv Man page Source code
print.cmpoutput Man page Source code
print.grpoutputs Man page Source code
print.micomp Man page Source code
pst Man page Source code
pvalcol Man page Source code
pvalf Man page Source code
pvalf.default Man page Source code
summary.assumptions_cmpoutput Man page Source code
summary.assumptions_micomp Man page Source code
summary.cmpoutput Man page Source code
summary.grpoutputs Man page Source code
summary.micomp Man page Source code
tikzscat Man page Source code
toLatex.cmpoutput Man page Source code
toLatex.micomp Man page Source code
tscat_apply Man page Source code

Files

inst
inst/CITATION
inst/extdata
inst/extdata/nl_ok
inst/extdata/nl_ok/stats400v1r1.tsv
inst/extdata/nl_ok/stats400v1r3.tsv
inst/extdata/nl_ok/stats400v1r6.tsv
inst/extdata/nl_ok/stats400v1r10.tsv
inst/extdata/nl_ok/stats400v1r2.tsv
inst/extdata/nl_ok/stats400v1r4.tsv
inst/extdata/nl_ok/stats400v1r8.tsv
inst/extdata/nl_ok/stats400v1r5.tsv
inst/extdata/nl_ok/stats400v1r9.tsv
inst/extdata/nl_ok/stats400v1r7.tsv
inst/extdata/j_ex_noshuff
inst/extdata/j_ex_noshuff/stats400v1t8r63.tsv
inst/extdata/j_ex_noshuff/stats400v1t8r69.tsv
inst/extdata/j_ex_noshuff/stats400v1t8r64.tsv
inst/extdata/j_ex_noshuff/stats400v1t8r65.tsv
inst/extdata/j_ex_noshuff/stats400v1t8r62.tsv
inst/extdata/j_ex_noshuff/stats400v1t8r61.tsv
inst/extdata/j_ex_noshuff/stats400v1t8r70.tsv
inst/extdata/j_ex_noshuff/stats400v1t8r67.tsv
inst/extdata/j_ex_noshuff/stats400v1t8r66.tsv
inst/extdata/j_ex_noshuff/stats400v1t8r68.tsv
inst/extdata/j_ex_ok
inst/extdata/j_ex_ok/stats400v1t8r39.tsv
inst/extdata/j_ex_ok/stats400v1t8r35.tsv
inst/extdata/j_ex_ok/stats400v1t8r36.tsv
inst/extdata/j_ex_ok/stats400v1t8r34.tsv
inst/extdata/j_ex_ok/stats400v1t8r40.tsv
inst/extdata/j_ex_ok/stats400v1t8r32.tsv
inst/extdata/j_ex_ok/stats400v1t8r38.tsv
inst/extdata/j_ex_ok/stats400v1t8r33.tsv
inst/extdata/j_ex_ok/stats400v1t8r31.tsv
inst/extdata/j_ex_ok/stats400v1t8r37.tsv
inst/extdata/testdata
inst/extdata/testdata/NA
inst/extdata/testdata/NA/stats400v1r4n20B.tsv
inst/extdata/testdata/NA/stats400v1r2n20A.tsv
inst/extdata/testdata/NA/stats400v1r3n20A.tsv
inst/extdata/testdata/NA/stats400v1r6n20B.tsv
inst/extdata/testdata/NA/stats400v1r1n20A.tsv
inst/extdata/testdata/NA/stats400v1r5n20B.tsv
inst/extdata/testdata/n50
inst/extdata/testdata/n50/stats400v1r1n50.tsv
inst/extdata/j_ex_diff
inst/extdata/j_ex_diff/stats400v1t8r97.tsv
inst/extdata/j_ex_diff/stats400v1t8r94.tsv
inst/extdata/j_ex_diff/stats400v1t8r96.tsv
inst/extdata/j_ex_diff/stats400v1t8r92.tsv
inst/extdata/j_ex_diff/stats400v1t8r100.tsv
inst/extdata/j_ex_diff/stats400v1t8r93.tsv
inst/extdata/j_ex_diff/stats400v1t8r91.tsv
inst/extdata/j_ex_diff/stats400v1t8r99.tsv
inst/extdata/j_ex_diff/stats400v1t8r98.tsv
inst/extdata/j_ex_diff/stats400v1t8r95.tsv
inst/doc
inst/doc/tolatex-examples.R
inst/doc/paper.Rnw
inst/doc/tolatex-examples.Rnw
inst/doc/tolatex-examples.pdf
inst/doc/paper.pdf
inst/doc/paper.R
tests
tests/testthat.R
tests/testthat
tests/testthat/test_util.R
tests/testthat/test_grpoutputs.R
tests/testthat/test_micomp.R
tests/testthat/test_assumptions.R
tests/testthat/test_cmpoutput.R
NAMESPACE
data
data/pphpc_testvlo.rdata
data/pphcp_noshuff.rdata
data/pphcp_diff.rdata
data/pphcp_ok.rdata
R
R/pphpc_diff.R
R/pphpc_ok.R
R/grpoutputs.R
R/micompr.R
R/assumptions.R
R/pphpc_testvlo.R
R/util.R
R/micomp.R
R/cmpoutput.R
R/pphpc_noshuff.R
R/latex_tables.R
vignettes
vignettes/paper.Rnw
vignettes/tolatex-examples.Rnw
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/plot.assumptions_manova.Rd
man/print.assumptions_manova.Rd
man/summary.micomp.Rd
man/pphpc_noshuff.Rd
man/pvalf.default.Rd
man/print.assumptions_cmpoutput.Rd
man/centerscale.Rd
man/print.assumptions_micomp.Rd
man/print.cmpoutput.Rd
man/pphpc_testvlo.Rd
man/pvalf.Rd
man/print.assumptions_paruv.Rd
man/plot.assumptions_cmpoutput.Rd
man/tikzscat.Rd
man/print.micomp.Rd
man/micomp.Rd
man/cmpoutput.Rd
man/concat_outputs.Rd
man/assumptions_paruv.Rd
man/summary.assumptions_micomp.Rd
man/plot.assumptions_paruv.Rd
man/assumptions_manova.Rd
man/assumptions.micomp.Rd
man/plot.assumptions_micomp.Rd
man/plot.micomp.Rd
man/summary.assumptions_cmpoutput.Rd
man/assumptions.Rd
man/plot.cmpoutput.Rd
man/pphpc_ok.Rd
man/grpoutputs.Rd
man/plotcols.Rd
man/summary.cmpoutput.Rd
man/toLatex.cmpoutput.Rd
man/pphpc_diff.Rd
man/pvalcol.Rd
man/tscat_apply.Rd
man/plot.grpoutputs.Rd
man/toLatex.micomp.Rd
man/assumptions.cmpoutput.Rd
man/summary.grpoutputs.Rd
man/print.grpoutputs.Rd
man/micompr.Rd
man/pst.Rd
LICENSE
micompr documentation built on May 20, 2017, 5:33 a.m.