micompr: Multivariate Independent Comparison of Observations

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A procedure for comparing multivariate samples associated with different groups. It uses principal component analysis to convert multivariate observations into a set of linearly uncorrelated statistical measures, which are then compared using a number of statistical methods. The procedure is independent of the distributional properties of samples and automatically selects features that best explain their differences, avoiding manual selection of specific points or summary statistics. It is appropriate for comparing samples of time series, images, spectrometric measures or similar multivariate observations.

Author
Nuno Fachada [aut, cre]
Date of publication
2016-08-04 21:56:52
Maintainer
Nuno Fachada <faken@fakenmc.com>
License
MIT + file LICENSE
Version
1.0.1
URLs

View on CRAN

Man pages

assumptions
Parametric tests assumptions
assumptions.cmpoutput
Get assumptions for parametric tests performed on output...
assumptions_manova
Determine the assumptions for the MANOVA test
assumptions.micomp
Get assumptions for parametric tests performed on each...
assumptions_paruv
Determine the assumptions for the parametric comparison test
centerscale
Center and scale vector
cmpoutput
Compares output observations from two or more groups
concat_outputs
Concatenate multiple outputs with multiple observations
grpoutputs
Load and group outputs from files
micomp
Multiple independent comparisons of observations
micompr
micompr: multivariate independent comparison of observations
plot.assumptions_cmpoutput
Plot _p_-values for testing the assumptions of the parametric...
plot.assumptions_manova
Plot _p_-values for testing the multivariate normality...
plot.assumptions_micomp
Plot _p_-values for testing the assumptions of the parametric...
plot.assumptions_paruv
Plot _p_-values for testing the assumptions of the parametric...
plot.cmpoutput
Plot comparison of an output
plotcols
Default colors for plots in 'micomp' package
plot.grpoutputs
Plot grouped outputs
plot.micomp
Plot projection of output observations on the first two...
pphpc_diff
Data from two implementations of the PPHPC model, one of...
pphpc_noshuff
Data from two implementations of the PPHPC model, one of...
pphpc_ok
Data from two similar implementations of the PPHPC model
pphpc_testvlo
Data for testing variable length outputs
print.assumptions_cmpoutput
Print method for the assumptions of parametric tests used in...
print.assumptions_manova
Print information about the assumptions of the MANOVA test
print.assumptions_micomp
Print information about the assumptions concerning the...
print.assumptions_paruv
Print information about the assumptions of the parametric...
print.cmpoutput
Print information about comparison of an output
print.grpoutputs
Print information about grouped outputs
print.micomp
Print information about multiple comparisons of outputs
pst
Concatenate strings without any separator characters
pvalcol
Associate colors to _p_-values
pvalf
Format p-values
pvalf.default
Default p-value formatting method
summary.assumptions_cmpoutput
Summary method for the assumptions of parametric tests used...
summary.assumptions_micomp
Summary method for the assumptions of parametric tests used...
summary.cmpoutput
Summary method for comparison of an output
summary.grpoutputs
Summary method for grouped outputs
summary.micomp
Summary method for multiple comparisons of outputs
tikzscat
Simple 'TikZ' scatter plot
toLatex.cmpoutput
Convert 'cmpoutput' object to 'LaTeX' table
toLatex.micomp
Convert 'micomp' object to 'LaTeX' table
tscat_apply
Multiple 'TikZ' 2D scatter plots for a list of output...

Files in this package

micompr
micompr/inst
micompr/inst/CITATION
micompr/inst/extdata
micompr/inst/extdata/nl_ok
micompr/inst/extdata/nl_ok/stats400v1r1.tsv
micompr/inst/extdata/nl_ok/stats400v1r3.tsv
micompr/inst/extdata/nl_ok/stats400v1r6.tsv
micompr/inst/extdata/nl_ok/stats400v1r10.tsv
micompr/inst/extdata/nl_ok/stats400v1r2.tsv
micompr/inst/extdata/nl_ok/stats400v1r4.tsv
micompr/inst/extdata/nl_ok/stats400v1r8.tsv
micompr/inst/extdata/nl_ok/stats400v1r5.tsv
micompr/inst/extdata/nl_ok/stats400v1r9.tsv
micompr/inst/extdata/nl_ok/stats400v1r7.tsv
micompr/inst/extdata/j_ex_noshuff
micompr/inst/extdata/j_ex_noshuff/stats400v1t8r63.tsv
micompr/inst/extdata/j_ex_noshuff/stats400v1t8r69.tsv
micompr/inst/extdata/j_ex_noshuff/stats400v1t8r64.tsv
micompr/inst/extdata/j_ex_noshuff/stats400v1t8r65.tsv
micompr/inst/extdata/j_ex_noshuff/stats400v1t8r62.tsv
micompr/inst/extdata/j_ex_noshuff/stats400v1t8r61.tsv
micompr/inst/extdata/j_ex_noshuff/stats400v1t8r70.tsv
micompr/inst/extdata/j_ex_noshuff/stats400v1t8r67.tsv
micompr/inst/extdata/j_ex_noshuff/stats400v1t8r66.tsv
micompr/inst/extdata/j_ex_noshuff/stats400v1t8r68.tsv
micompr/inst/extdata/j_ex_ok
micompr/inst/extdata/j_ex_ok/stats400v1t8r39.tsv
micompr/inst/extdata/j_ex_ok/stats400v1t8r35.tsv
micompr/inst/extdata/j_ex_ok/stats400v1t8r36.tsv
micompr/inst/extdata/j_ex_ok/stats400v1t8r34.tsv
micompr/inst/extdata/j_ex_ok/stats400v1t8r40.tsv
micompr/inst/extdata/j_ex_ok/stats400v1t8r32.tsv
micompr/inst/extdata/j_ex_ok/stats400v1t8r38.tsv
micompr/inst/extdata/j_ex_ok/stats400v1t8r33.tsv
micompr/inst/extdata/j_ex_ok/stats400v1t8r31.tsv
micompr/inst/extdata/j_ex_ok/stats400v1t8r37.tsv
micompr/inst/extdata/testdata
micompr/inst/extdata/testdata/NA
micompr/inst/extdata/testdata/NA/stats400v1r4n20B.tsv
micompr/inst/extdata/testdata/NA/stats400v1r2n20A.tsv
micompr/inst/extdata/testdata/NA/stats400v1r3n20A.tsv
micompr/inst/extdata/testdata/NA/stats400v1r6n20B.tsv
micompr/inst/extdata/testdata/NA/stats400v1r1n20A.tsv
micompr/inst/extdata/testdata/NA/stats400v1r5n20B.tsv
micompr/inst/extdata/testdata/n50
micompr/inst/extdata/testdata/n50/stats400v1r1n50.tsv
micompr/inst/extdata/j_ex_diff
micompr/inst/extdata/j_ex_diff/stats400v1t8r97.tsv
micompr/inst/extdata/j_ex_diff/stats400v1t8r94.tsv
micompr/inst/extdata/j_ex_diff/stats400v1t8r96.tsv
micompr/inst/extdata/j_ex_diff/stats400v1t8r92.tsv
micompr/inst/extdata/j_ex_diff/stats400v1t8r100.tsv
micompr/inst/extdata/j_ex_diff/stats400v1t8r93.tsv
micompr/inst/extdata/j_ex_diff/stats400v1t8r91.tsv
micompr/inst/extdata/j_ex_diff/stats400v1t8r99.tsv
micompr/inst/extdata/j_ex_diff/stats400v1t8r98.tsv
micompr/inst/extdata/j_ex_diff/stats400v1t8r95.tsv
micompr/inst/doc
micompr/inst/doc/tolatex-examples.R
micompr/inst/doc/paper.Rnw
micompr/inst/doc/tolatex-examples.Rnw
micompr/inst/doc/tolatex-examples.pdf
micompr/inst/doc/paper.pdf
micompr/inst/doc/paper.R
micompr/tests
micompr/tests/testthat.R
micompr/tests/testthat
micompr/tests/testthat/test_util.R
micompr/tests/testthat/test_grpoutputs.R
micompr/tests/testthat/test_micomp.R
micompr/tests/testthat/test_assumptions.R
micompr/tests/testthat/test_cmpoutput.R
micompr/NAMESPACE
micompr/data
micompr/data/pphpc_testvlo.rdata
micompr/data/pphcp_noshuff.rdata
micompr/data/pphcp_diff.rdata
micompr/data/pphcp_ok.rdata
micompr/R
micompr/R/pphpc_diff.R
micompr/R/pphpc_ok.R
micompr/R/grpoutputs.R
micompr/R/micompr.R
micompr/R/assumptions.R
micompr/R/pphpc_testvlo.R
micompr/R/util.R
micompr/R/micomp.R
micompr/R/cmpoutput.R
micompr/R/pphpc_noshuff.R
micompr/R/latex_tables.R
micompr/vignettes
micompr/vignettes/paper.Rnw
micompr/vignettes/tolatex-examples.Rnw
micompr/README.md
micompr/MD5
micompr/build
micompr/build/vignette.rds
micompr/DESCRIPTION
micompr/man
micompr/man/plot.assumptions_manova.Rd
micompr/man/print.assumptions_manova.Rd
micompr/man/summary.micomp.Rd
micompr/man/pphpc_noshuff.Rd
micompr/man/pvalf.default.Rd
micompr/man/print.assumptions_cmpoutput.Rd
micompr/man/centerscale.Rd
micompr/man/print.assumptions_micomp.Rd
micompr/man/print.cmpoutput.Rd
micompr/man/pphpc_testvlo.Rd
micompr/man/pvalf.Rd
micompr/man/print.assumptions_paruv.Rd
micompr/man/plot.assumptions_cmpoutput.Rd
micompr/man/tikzscat.Rd
micompr/man/print.micomp.Rd
micompr/man/micomp.Rd
micompr/man/cmpoutput.Rd
micompr/man/concat_outputs.Rd
micompr/man/assumptions_paruv.Rd
micompr/man/summary.assumptions_micomp.Rd
micompr/man/plot.assumptions_paruv.Rd
micompr/man/assumptions_manova.Rd
micompr/man/assumptions.micomp.Rd
micompr/man/plot.assumptions_micomp.Rd
micompr/man/plot.micomp.Rd
micompr/man/summary.assumptions_cmpoutput.Rd
micompr/man/assumptions.Rd
micompr/man/plot.cmpoutput.Rd
micompr/man/pphpc_ok.Rd
micompr/man/grpoutputs.Rd
micompr/man/plotcols.Rd
micompr/man/summary.cmpoutput.Rd
micompr/man/toLatex.cmpoutput.Rd
micompr/man/pphpc_diff.Rd
micompr/man/pvalcol.Rd
micompr/man/tscat_apply.Rd
micompr/man/plot.grpoutputs.Rd
micompr/man/toLatex.micomp.Rd
micompr/man/assumptions.cmpoutput.Rd
micompr/man/summary.grpoutputs.Rd
micompr/man/print.grpoutputs.Rd
micompr/man/micompr.Rd
micompr/man/pst.Rd
micompr/LICENSE