micompr: Multivariate Independent Comparison of Observations

A procedure for comparing multivariate samples associated with different groups. It uses principal component analysis to convert multivariate observations into a set of linearly uncorrelated statistical measures, which are then compared using a number of statistical methods. The procedure is independent of the distributional properties of samples and automatically selects features that best explain their differences, avoiding manual selection of specific points or summary statistics. It is appropriate for comparing samples of time series, images, spectrometric measures or similar multivariate observations.

AuthorNuno Fachada [aut, cre]
Date of publication2016-08-04 21:56:52
MaintainerNuno Fachada <faken@fakenmc.com>
LicenseMIT + file LICENSE
Version1.0.1
http://github.com/fakenmc/micompr

View on CRAN

Man pages

assumptions: Parametric tests assumptions

assumptions.cmpoutput: Get assumptions for parametric tests performed on output...

assumptions_manova: Determine the assumptions for the MANOVA test

assumptions.micomp: Get assumptions for parametric tests performed on each...

assumptions_paruv: Determine the assumptions for the parametric comparison test

centerscale: Center and scale vector

cmpoutput: Compares output observations from two or more groups

concat_outputs: Concatenate multiple outputs with multiple observations

grpoutputs: Load and group outputs from files

micomp: Multiple independent comparisons of observations

micompr: micompr: multivariate independent comparison of observations

plot.assumptions_cmpoutput: Plot _p_-values for testing the assumptions of the parametric...

plot.assumptions_manova: Plot _p_-values for testing the multivariate normality...

plot.assumptions_micomp: Plot _p_-values for testing the assumptions of the parametric...

plot.assumptions_paruv: Plot _p_-values for testing the assumptions of the parametric...

plot.cmpoutput: Plot comparison of an output

plotcols: Default colors for plots in 'micomp' package

plot.grpoutputs: Plot grouped outputs

plot.micomp: Plot projection of output observations on the first two...

pphpc_diff: Data from two implementations of the PPHPC model, one of...

pphpc_noshuff: Data from two implementations of the PPHPC model, one of...

pphpc_ok: Data from two similar implementations of the PPHPC model

pphpc_testvlo: Data for testing variable length outputs

print.assumptions_cmpoutput: Print method for the assumptions of parametric tests used in...

print.assumptions_manova: Print information about the assumptions of the MANOVA test

print.assumptions_micomp: Print information about the assumptions concerning the...

print.assumptions_paruv: Print information about the assumptions of the parametric...

print.cmpoutput: Print information about comparison of an output

print.grpoutputs: Print information about grouped outputs

print.micomp: Print information about multiple comparisons of outputs

pst: Concatenate strings without any separator characters

pvalcol: Associate colors to _p_-values

pvalf: Format p-values

pvalf.default: Default p-value formatting method

summary.assumptions_cmpoutput: Summary method for the assumptions of parametric tests used...

summary.assumptions_micomp: Summary method for the assumptions of parametric tests used...

summary.cmpoutput: Summary method for comparison of an output

summary.grpoutputs: Summary method for grouped outputs

summary.micomp: Summary method for multiple comparisons of outputs

tikzscat: Simple 'TikZ' scatter plot

toLatex.cmpoutput: Convert 'cmpoutput' object to 'LaTeX' table

toLatex.micomp: Convert 'micomp' object to 'LaTeX' table

tscat_apply: Multiple 'TikZ' 2D scatter plots for a list of output...

Files in this package

micompr
micompr/inst
micompr/inst/CITATION
micompr/inst/extdata
micompr/inst/extdata/nl_ok
micompr/inst/extdata/nl_ok/stats400v1r1.tsv
micompr/inst/extdata/nl_ok/stats400v1r3.tsv
micompr/inst/extdata/nl_ok/stats400v1r6.tsv
micompr/inst/extdata/nl_ok/stats400v1r10.tsv
micompr/inst/extdata/nl_ok/stats400v1r2.tsv
micompr/inst/extdata/nl_ok/stats400v1r4.tsv
micompr/inst/extdata/nl_ok/stats400v1r8.tsv
micompr/inst/extdata/nl_ok/stats400v1r5.tsv
micompr/inst/extdata/nl_ok/stats400v1r9.tsv
micompr/inst/extdata/nl_ok/stats400v1r7.tsv
micompr/inst/extdata/j_ex_noshuff
micompr/inst/extdata/j_ex_noshuff/stats400v1t8r63.tsv
micompr/inst/extdata/j_ex_noshuff/stats400v1t8r69.tsv
micompr/inst/extdata/j_ex_noshuff/stats400v1t8r64.tsv
micompr/inst/extdata/j_ex_noshuff/stats400v1t8r65.tsv
micompr/inst/extdata/j_ex_noshuff/stats400v1t8r62.tsv
micompr/inst/extdata/j_ex_noshuff/stats400v1t8r61.tsv
micompr/inst/extdata/j_ex_noshuff/stats400v1t8r70.tsv
micompr/inst/extdata/j_ex_noshuff/stats400v1t8r67.tsv
micompr/inst/extdata/j_ex_noshuff/stats400v1t8r66.tsv
micompr/inst/extdata/j_ex_noshuff/stats400v1t8r68.tsv
micompr/inst/extdata/j_ex_ok
micompr/inst/extdata/j_ex_ok/stats400v1t8r39.tsv
micompr/inst/extdata/j_ex_ok/stats400v1t8r35.tsv
micompr/inst/extdata/j_ex_ok/stats400v1t8r36.tsv
micompr/inst/extdata/j_ex_ok/stats400v1t8r34.tsv
micompr/inst/extdata/j_ex_ok/stats400v1t8r40.tsv
micompr/inst/extdata/j_ex_ok/stats400v1t8r32.tsv
micompr/inst/extdata/j_ex_ok/stats400v1t8r38.tsv
micompr/inst/extdata/j_ex_ok/stats400v1t8r33.tsv
micompr/inst/extdata/j_ex_ok/stats400v1t8r31.tsv
micompr/inst/extdata/j_ex_ok/stats400v1t8r37.tsv
micompr/inst/extdata/testdata
micompr/inst/extdata/testdata/NA
micompr/inst/extdata/testdata/NA/stats400v1r4n20B.tsv
micompr/inst/extdata/testdata/NA/stats400v1r2n20A.tsv
micompr/inst/extdata/testdata/NA/stats400v1r3n20A.tsv
micompr/inst/extdata/testdata/NA/stats400v1r6n20B.tsv
micompr/inst/extdata/testdata/NA/stats400v1r1n20A.tsv
micompr/inst/extdata/testdata/NA/stats400v1r5n20B.tsv
micompr/inst/extdata/testdata/n50
micompr/inst/extdata/testdata/n50/stats400v1r1n50.tsv
micompr/inst/extdata/j_ex_diff
micompr/inst/extdata/j_ex_diff/stats400v1t8r97.tsv
micompr/inst/extdata/j_ex_diff/stats400v1t8r94.tsv
micompr/inst/extdata/j_ex_diff/stats400v1t8r96.tsv
micompr/inst/extdata/j_ex_diff/stats400v1t8r92.tsv
micompr/inst/extdata/j_ex_diff/stats400v1t8r100.tsv
micompr/inst/extdata/j_ex_diff/stats400v1t8r93.tsv
micompr/inst/extdata/j_ex_diff/stats400v1t8r91.tsv
micompr/inst/extdata/j_ex_diff/stats400v1t8r99.tsv
micompr/inst/extdata/j_ex_diff/stats400v1t8r98.tsv
micompr/inst/extdata/j_ex_diff/stats400v1t8r95.tsv
micompr/inst/doc
micompr/inst/doc/tolatex-examples.R
micompr/inst/doc/paper.Rnw
micompr/inst/doc/tolatex-examples.Rnw
micompr/inst/doc/tolatex-examples.pdf
micompr/inst/doc/paper.pdf
micompr/inst/doc/paper.R
micompr/tests
micompr/tests/testthat.R
micompr/tests/testthat
micompr/tests/testthat/test_util.R
micompr/tests/testthat/test_grpoutputs.R
micompr/tests/testthat/test_micomp.R
micompr/tests/testthat/test_assumptions.R
micompr/tests/testthat/test_cmpoutput.R
micompr/NAMESPACE
micompr/data
micompr/data/pphpc_testvlo.rdata
micompr/data/pphcp_noshuff.rdata
micompr/data/pphcp_diff.rdata
micompr/data/pphcp_ok.rdata
micompr/R
micompr/R/pphpc_diff.R micompr/R/pphpc_ok.R micompr/R/grpoutputs.R micompr/R/micompr.R micompr/R/assumptions.R micompr/R/pphpc_testvlo.R micompr/R/util.R micompr/R/micomp.R micompr/R/cmpoutput.R micompr/R/pphpc_noshuff.R micompr/R/latex_tables.R
micompr/vignettes
micompr/vignettes/paper.Rnw
micompr/vignettes/tolatex-examples.Rnw
micompr/README.md
micompr/MD5
micompr/build
micompr/build/vignette.rds
micompr/DESCRIPTION
micompr/man
micompr/man/plot.assumptions_manova.Rd micompr/man/print.assumptions_manova.Rd micompr/man/summary.micomp.Rd micompr/man/pphpc_noshuff.Rd micompr/man/pvalf.default.Rd micompr/man/print.assumptions_cmpoutput.Rd micompr/man/centerscale.Rd micompr/man/print.assumptions_micomp.Rd micompr/man/print.cmpoutput.Rd micompr/man/pphpc_testvlo.Rd micompr/man/pvalf.Rd micompr/man/print.assumptions_paruv.Rd micompr/man/plot.assumptions_cmpoutput.Rd micompr/man/tikzscat.Rd micompr/man/print.micomp.Rd micompr/man/micomp.Rd micompr/man/cmpoutput.Rd micompr/man/concat_outputs.Rd micompr/man/assumptions_paruv.Rd micompr/man/summary.assumptions_micomp.Rd micompr/man/plot.assumptions_paruv.Rd micompr/man/assumptions_manova.Rd micompr/man/assumptions.micomp.Rd micompr/man/plot.assumptions_micomp.Rd micompr/man/plot.micomp.Rd micompr/man/summary.assumptions_cmpoutput.Rd micompr/man/assumptions.Rd micompr/man/plot.cmpoutput.Rd micompr/man/pphpc_ok.Rd micompr/man/grpoutputs.Rd micompr/man/plotcols.Rd micompr/man/summary.cmpoutput.Rd micompr/man/toLatex.cmpoutput.Rd micompr/man/pphpc_diff.Rd micompr/man/pvalcol.Rd micompr/man/tscat_apply.Rd micompr/man/plot.grpoutputs.Rd micompr/man/toLatex.micomp.Rd micompr/man/assumptions.cmpoutput.Rd micompr/man/summary.grpoutputs.Rd micompr/man/print.grpoutputs.Rd micompr/man/micompr.Rd micompr/man/pst.Rd
micompr/LICENSE

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