microclass: Methods for Taxonomic Classification of Prokaryotes

Functions for assigning 16S sequence data to a taxonomic level in the tree-of-life for prokaryotes.

AuthorKristian Hovde Liland, Hilde Vinje, Lars Snipen
Date of publication2017-01-17 19:41:20
MaintainerLars Snipen <lars.snipen@nmbu.no>
LicenseGPL (>= 2)
Version1.1

View on CRAN

Files

microclass
microclass/inst
microclass/inst/extdata
microclass/inst/extdata/rprob.mat.1400.rda
microclass/inst/extdata/std.frame.rda
microclass/inst/extdata/norm.models.rda
microclass/inst/extdata/rprob.mat.500.rda
microclass/inst/extdata/rprob.mat.300.rda
microclass/inst/extdata/rprob.mat.150.rda
microclass/inst/doc
microclass/inst/doc/intro.html
microclass/inst/doc/intro.R
microclass/inst/doc/intro.Rmd
microclass/src
microclass/src/rdpTrainCpp.cpp
microclass/src/Makevars
microclass/src/pow4int.cpp
microclass/src/charToInt.cpp
microclass/src/multinomTrainCpp.cpp
microclass/src/pow4inthead.h
microclass/src/KmerCount.cpp
microclass/src/Makevars.win
microclass/src/rdpClassifyCpp.cpp
microclass/src/RcppExports.cpp
microclass/src/multinomClassify.cpp
microclass/NAMESPACE
microclass/data
microclass/data/small.16S.rda
microclass/R
microclass/R/taxMachine.R microclass/R/multinom.R microclass/R/RcppExports.R microclass/R/blast.R microclass/R/rdpClassifier.R microclass/R/KmerCount.R microclass/R/datasets.R microclass/R/zzz.R microclass/R/microclass-package.R
microclass/vignettes
microclass/vignettes/intro.Rmd
microclass/MD5
microclass/build
microclass/build/vignette.rds
microclass/DESCRIPTION
microclass/man
microclass/man/rdpClassify.Rd microclass/man/rdpTrain.Rd microclass/man/multinomTrain.Rd microclass/man/microclass-package.Rd microclass/man/multinomClassify.Rd microclass/man/KmerCount.Rd microclass/man/blastClassify16S.Rd microclass/man/small.16S.Rd microclass/man/blastDbase16S.Rd microclass/man/setParallel.Rd microclass/man/taxMachine.Rd

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