minPtest: Gene region-level testing procedure for SNP data, using the min P test resampling approach

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Package minPtest is designed for estimating a gene region-level summary for SNP data from case-control studies using a permutation-based resampling method, called min P test, allowing execution on a compute cluster or multicore computer.

Author
Stefanie Hieke
Date of publication
2013-12-19 19:05:00
Maintainer
Stefanie Hieke <hieke@imbi.uni-freiburg.de>
License
GPL (>= 2.14)
Version
1.7

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Man pages

generateSNPs
Simulation of SNP data
minPtest
A gene region-level testing procedure for each candidate gene...
plot.minPtest
Plot method for "minPtest" object
summary.minPtest
Summary method for a "minPtest" object

Files in this package

minPtest
minPtest/inst
minPtest/inst/doc
minPtest/inst/doc/vignette.Snw
minPtest/inst/doc/vignette.pdf
minPtest/NAMESPACE
minPtest/R
minPtest/R/summary.minPtest.R
minPtest/R/plot.minPtest.R
minPtest/R/generateSNPs.R
minPtest/R/minPtest.R
minPtest/vignettes
minPtest/vignettes/vignette.Snw
minPtest/vignettes/plots
minPtest/vignettes/plots/plot_minPtest2_object2.pdf
minPtest/vignettes/plots/plot_minPtest1_object1.pdf
minPtest/MD5
minPtest/build
minPtest/build/vignette.rds
minPtest/DESCRIPTION
minPtest/man
minPtest/man/summary.minPtest.Rd
minPtest/man/generateSNPs.Rd
minPtest/man/minPtest.Rd
minPtest/man/plot.minPtest.Rd