minval: MINimal VALidation for Stoichiometric Reactions

For a given set of stoichiometric reactions, this package evaluates the mass and charge balance, extracts all reactants, products, orphan metabolites, metabolite names and compartments. Also are included some options to write models in TSV and SBML formats.

AuthorDaniel Osorio [aut,cre], Janneth Gonzalez [aut], Andres Pinzon-Velasco [aut].
Date of publication2016-10-04 14:46:35
MaintainerDaniel Osorio <dcosorioh@unal.edu.co>
LicenseGPL-2
Version0.5

View on CRAN

Files

minval
minval/inst
minval/inst/tests
minval/inst/tests/runit.compartments.R
minval/inst/tests/runalltest.R
minval/inst/tests/runit.orphanReactants.R
minval/inst/tests/runit.metabolites.R
minval/inst/tests/runit.isBalanced.R
minval/inst/tests/runit.reactants.R
minval/inst/tests/runit.products.R
minval/inst/tests/runit.isValidSyntax.R
minval/inst/tests/runit.orphanProducts.R
minval/inst/tests/runit.stoichiometricMatrix.R
minval/inst/extdata
minval/inst/extdata/glycolysisKEGG.xlsx
minval/inst/extdata/chemData.csv
minval/inst/extdata/glycolysisKEGG.csv
minval/tests
minval/tests/doRUnit.R
minval/NAMESPACE
minval/NEWS
minval/R
minval/R/getChEBI.R minval/R/xls2sbml.R minval/R/isBalanced.R minval/R/orphanReactants.R minval/R/orphanProducts.R minval/R/stoichiometricMatrix.R minval/R/metabolites.R minval/R/compartments.R minval/R/minvalInternal.R minval/R/isValidSyntax.R minval/R/convert2sbmlR.R minval/R/products.R minval/R/convert2sbml.R minval/R/reactants.R minval/R/mapReactions.R minval/R/writeTSVmod.R
minval/README.md
minval/MD5
minval/DESCRIPTION
minval/man
minval/man/reactants.Rd minval/man/metabolites.Rd minval/man/convert2sbmlR.Rd minval/man/products.Rd minval/man/stoichiometricMatrix.Rd minval/man/mapReactions.Rd minval/man/writeTSVmod.Rd minval/man/orphanReactants.Rd minval/man/xls2sbml.Rd minval/man/orphanProducts.Rd minval/man/getChEBI.Rd minval/man/convert2sbml.Rd minval/man/compartments.Rd minval/man/isBalanced.Rd minval/man/isValidSyntax.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.