coxmap: Mouse genetic map based on Cox et al....

In mmconvert: Mouse Map Converter

Mouse genetic map based on Cox et al. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1534/genetics.109.105486")}, revised for mouse genome build 39.

Description

A data frame with rows being markers and six columns: marker name, chromosome, sex-averaged cM position, female cM position, male cM position, and build 39 basepair position.

Details

Genetic maps were re-estimated after reordering markers according to their position in mouse genome build 39. See https://github.com/kbroman/CoxMapV3. Markers were shifted so that 0 cM corresponds to 3 Mbp, using the chromosome- and sex-specific recombination rate. The maps are smoothed slightly to avoid intervals with 0 recombination.

Source

https://github.com/kbroman/CoxMapV3

Examples

data(coxmap)

mmconvert documentation built on April 25, 2023, 5:13 p.m.