morphomapPic: morphomapPic

In morphomap: Morphometric Maps, Bone Landmarking and Cross Sectional Geometry

morphomapPic

Description

Save the sections defined via morphomapShape or morphomapCore

Usage

morphomapPic(
  morphomap.core,
  morphomap.shape,
  vector = NULL,
  full = TRUE,
  width = 1500,
  height = 1500,
  pointsize = 12,
  res = 300,
  colthk = "red",
  collbs = "blue",
  dirpath = tempdir()
)

Arguments

morphomap.core	list: morphomap.core object
morphomap.shape	list: morphomap.shape object
vector	numeric: define which sections will be saved
full	logical: if TRUE the thickness at ALPM is reported
width	numeric: width of the picture
height	numeric: height of the picture
pointsize	numeric: pointsize of plotted text
res	numeric: the nominal resolution in ppi which will be recorded
colthk	specify the color for the numbers
collbs	specify the color for the labels
dirpath	character: path of the directory where the pictures will be saved

Author(s)

Antonio Profico, Luca Bondioli, Pasquale Raia, Paul O'Higgins, Damiano Marchi

Examples

#export picture from a human femur bone
data(HomFem38023)
meshes<-morphomapSegm(HomFem38023, param1=4)
perMesh<-meshes$external
endMesh<-meshes$internal
mech_length<-380.23
rawSections<-morphomapCore(out.sur=perMesh,
                           inn.sur=endMesh,num.sect=11,mech.len = mech_length, 
                           start = 0.2,end=0.8)
shapeSections<-morphomapShape(rawSections,250,sects_vector=NULL,cent.out="CCA",
delta=0.5, side="left")
morphomapPic(rawSections,shapeSections,full=TRUE,dirpath=tempdir(),
            width=2500,height=2500)

#export picture from a chimpanzee femur bone
data(PanFem27713)
meshes<-morphomapSegm(PanFem27713, param1=3)
perMesh<-meshes$external
endMesh<-meshes$internal
mech_length<-277.13
rawSections<-morphomapCore(out.sur=perMesh,
                           inn.sur=endMesh,num.sect=11,mech.len = mech_length, 
                           start = 0.2,end=0.8)
shapeSections<-morphomapShape(rawSections,250,sects_vector=NULL,cent.out="CCA",delta=0.5,
 side="left")
morphomapPic(rawSections,shapeSections,full=TRUE,dirpath=tempdir(),
             width=2500,height=2500)

morphomap documentation built on Oct. 10, 2023, 1:08 a.m.