PlotDoseResponse: Plot dose-response from 'DoseResponse' objects
In morseDR: Bayesian Inference of Binary, Count and Continuous Data in Toxicology

PlotDoseResponse

R Documentation

Plot dose-response from `DoseResponse` objects

Description

This is the generic plot S3 method for the DoseResponse class. It plots the survival probability as a function of concentration at a given target time.

For BinaryData object: The function plots the observed values of the survival probability at a given time point as a function of concentration. The 95% binomial confidence interval is added to each survival probability. It is calculated using function binom.test from package stats. Replicates are systematically pooled in this plot.
For CountData object: The function plots the observed values of the Number of at a given time point as a function of concentration. The 95% binomial confidence interval is added to each survival probability. It is calculated using function poisson.test. Replicates are systematically pooled in this plot.
For ContinuousData object: the function plots observed values of the response at a given time point as a function of concentration. The 95% binomial confidence interval is added to each set of data at each concentration. It is calculated using function t.test from package stats.

Usage

## S3 method for class 'DoseResponse'
plot(
  x,
  xlab = "Dose",
  ylab = NULL,
  main = NULL,
  log.scale = FALSE,
  addlegend = TRUE,
  dodge.width = 0,
  ...
)

## S3 method for class 'BinaryDoseResponse'
plot(
  x,
  xlab = "Concentration",
  ylab = NULL,
  main = NULL,
  log.scale = FALSE,
  addlegend = TRUE,
  dodge.width = 0,
  ...
)

## S3 method for class 'CountDoseResponse'
plot(
  x,
  xlab = "Concentration",
  ylab = NULL,
  main = NULL,
  log.scale = FALSE,
  addlegend = TRUE,
  dodge.width = 0,
  ...
)

## S3 method for class 'ContinuousDoseResponse'
plot(
  x,
  xlab = "Concentration",
  ylab = NULL,
  main = NULL,
  log.scale = FALSE,
  addlegend = TRUE,
  dodge.width = 0,
  ...
)

Arguments

`x`	an object of class `BinaryData`, `CountData` or `ContinuousData`
`xlab`	a label for the `X`-axis, by default `Dose`
`ylab`	a label for the `Y`-axis, by default `Response`
`main`	main title for the plot
`log.scale`	if `TRUE`, displays `X`-axis in log-scale
`addlegend`	if `TRUE`, adds a default legend to the plot
`dodge.width`	dodging width. Dodging preserves the vertical position of an geom while adjusting the horizontal position.
`...`	Further arguments to be passed to generic methods