plot_matrix: Plot a matrix as a heatmap

In mpmsim: Simulation of Matrix Population Models with Defined Life History Characteristics

Plot a matrix as a heatmap

Description

Visualise a matrix, such as a matrix population model (MPM), as a heatmap.

Usage

plot_matrix(mat, zero_na = FALSE, legend = FALSE, na_colour = NA, ...)

Arguments

mat	A matrix, such as the A matrix of a matrix population model
zero_na	Logical indicating whether zero values should be treated as NA
legend	Logical indicating whether to include a legend
na_colour	Colour for NA values
...	Additional arguments to be passed to ggplot

Value

A ggplot object

Author(s)

Owen Jones [e-mail]

See Also

Other utility: summarise_mpms()

Examples

matDim <- 10
A1 <- make_leslie_mpm(
  survival = seq(0.1, 0.7, length.out = matDim),
  fecundity = seq(0.1, 0.7, length.out = matDim),
  n_stages = matDim
)
plot_matrix(A1, zero_na = TRUE, na_colour = "black")
plot_matrix(A1, zero_na = TRUE, na_colour = NA)

mpmsim documentation built on April 4, 2025, 4:57 a.m.