mra: Analysis of Mark-Recapture Data

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Analysis of mark-recapture data using covariates. Models: CJS open population; Huggin's closed population. Link functions: logit, sine, hazard. Model selection and model averaging routines. Plot methods. Simulation routine. CJS methods produce estimates of population size using the Horvitz-Thompson estimator.

Author
Trent McDonald [cre, aut], Eric Regehr [ctb], Jeff Bromaghin [ctb]
Date of publication
2015-04-02 15:00:47
Maintainer
Trent McDonald <tmcdonald@west-inc.com>
License
GNU General Public License
Version
2.16.4

View on CRAN

Man pages

dipper.data
European Dipper data
F.3d.model.matrix
3-Dimensional capture-recapture model matrices
F.cjs.covars
F.cjs.covars
F.cjs.estim
F.cjs.estim - Cormack-Jolly-Seber estimation
F.cjs.gof
F.cjs.gof
F.cjs.simulate
F.cjs.simulate - Generation of capture histories that follow...
F.cr.model.avg
F.cr.model.avg - Model averaging of mark-recapture...
F.cr.model.matrix
Capture-Recapture model matrix
F.fit.table
F.fit.table - Produce a summary table of model fit...
F.huggins.estim
F.huggins.estim - Estimation of Huggins closed population...
F.sat.lik
F.sat.lik
F.step.cjs
F.step.cjs - Stepwise model selection for CJS models.
F.update.df
F.update.df - Update degrees of freedom in a...
ivar
Expand Individual-varying covariates in models
lines.cjs
lines.cjs
mra.control
mra.control - Control over MRA fitting process
mra-package
MRA - Mark Recapture Analysis
plot.cjs
Plot CJS Model
plot.nhat
Plot size estimates
predict.cjs
predict.cjs
print.cjs
Print Cormack-Jolly-Seber (CJS) Models
print.hug
Print Huggin's Model objects
print.nhat
print.nhat
residuals.cjs
Residuals for CJS Model
tvar
Expand Time-varying covariates in models

Files in this package

mra
mra/src
mra/src/Mrawin.f90
mra/NAMESPACE
mra/data
mra/data/dipper.histories.rda
mra/data/dipper.males.rda
mra/data/dipper.data.rda
mra/R
mra/R/F.sat.lik.R
mra/R/F.3d.model.matrix.r
mra/R/F.cr.model.avg.r
mra/R/ivar.R
mra/R/mra.control.r
mra/R/print.cjs.R
mra/R/residuals.cjs.R
mra/R/lines.cjs.R
mra/R/print.hug.R
mra/R/F.huggins.estim.R
mra/R/plot.nhat.r
mra/R/F.step.cjs.r
mra/R/print.nhat.R
mra/R/F.cjs.estim.R
mra/R/F.cjs.covars.R
mra/R/F.cr.model.matrix.R
mra/R/F.update.df.r
mra/R/F.cjs.gof.R
mra/R/predict.cjs.R
mra/R/plot.cjs.R
mra/R/F.cjs.simulate.r
mra/R/zzz.R
mra/R/tvar.r
mra/R/F.fit.table.r
mra/vignettes
mra/vignettes/Bromaghin_etal_2013_OJE.pdf
mra/MD5
mra/DESCRIPTION
mra/man
mra/man/F.fit.table.Rd
mra/man/plot.nhat.Rd
mra/man/F.cr.model.avg.Rd
mra/man/F.update.df.Rd
mra/man/F.huggins.estim.Rd
mra/man/F.3d.model.matrix.Rd
mra/man/F.cjs.gof.Rd
mra/man/print.nhat.Rd
mra/man/print.cjs.Rd
mra/man/F.cjs.estim.Rd
mra/man/lines.cjs.Rd
mra/man/tvar.Rd
mra/man/mra.control.Rd
mra/man/plot.cjs.Rd
mra/man/F.cjs.simulate.Rd
mra/man/F.step.cjs.Rd
mra/man/F.sat.lik.Rd
mra/man/residuals.cjs.Rd
mra/man/mra-package.Rd
mra/man/predict.cjs.Rd
mra/man/dipper.data.Rd
mra/man/F.cjs.covars.Rd
mra/man/print.hug.Rd
mra/man/ivar.Rd
mra/man/F.cr.model.matrix.Rd