mra: Analysis of Mark-Recapture Data
Version 2.16.4

Analysis of mark-recapture data using covariates. Models: CJS open population; Huggin's closed population. Link functions: logit, sine, hazard. Model selection and model averaging routines. Plot methods. Simulation routine. CJS methods produce estimates of population size using the Horvitz-Thompson estimator.

AuthorTrent McDonald [cre, aut], Eric Regehr [ctb], Jeff Bromaghin [ctb]
Date of publication2015-04-02 15:00:47
MaintainerTrent McDonald <tmcdonald@west-inc.com>
LicenseGNU General Public License
Version2.16.4
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("mra")

Getting started

Package overview

Popular man pages

dipper.data: European Dipper data
F.cr.model.avg: F.cr.model.avg - Model averaging of mark-recapture...
F.update.df: F.update.df - Update degrees of freedom in a...
mra.control: mra.control - Control over MRA fitting process
mra-package: MRA - Mark Recapture Analysis
predict.cjs: predict.cjs
print.nhat: print.nhat
See all...

All man pages Function index File listing

Man pages

dipper.data: European Dipper data
F.3d.model.matrix: 3-Dimensional capture-recapture model matrices
F.cjs.covars: F.cjs.covars
F.cjs.estim: F.cjs.estim - Cormack-Jolly-Seber estimation
F.cjs.gof: F.cjs.gof
F.cjs.simulate: F.cjs.simulate - Generation of capture histories that follow...
F.cr.model.avg: F.cr.model.avg - Model averaging of mark-recapture...
F.cr.model.matrix: Capture-Recapture model matrix
F.fit.table: F.fit.table - Produce a summary table of model fit...
F.huggins.estim: F.huggins.estim - Estimation of Huggins closed population...
F.sat.lik: F.sat.lik
F.step.cjs: F.step.cjs - Stepwise model selection for CJS models.
F.update.df: F.update.df - Update degrees of freedom in a...
ivar: Expand Individual-varying covariates in models
lines.cjs: lines.cjs
mra.control: mra.control - Control over MRA fitting process
mra-package: MRA - Mark Recapture Analysis
plot.cjs: Plot CJS Model
plot.nhat: Plot size estimates
predict.cjs: predict.cjs
print.cjs: Print Cormack-Jolly-Seber (CJS) Models
print.hug: Print Huggin's Model objects
print.nhat: print.nhat
residuals.cjs: Residuals for CJS Model
tvar: Expand Time-varying covariates in models

Functions

CJS Man page
Cormack Man page
F.3d.model.matrix Man page
F.cjs.covars Man page
F.cjs.estim Man page
F.cjs.gof Man page
F.cjs.simulate Man page
F.cr.model.avg Man page
F.cr.model.matrix Man page
F.fit.table Man page
F.huggins.estim Man page
F.sat.lik Man page
F.step.cjs Man page
F.update.df Man page
Huggins Man page
Jolly Man page
Seber Man page
cjs Man page
cr.estim Man page
dipper.data Man page
dipper.histories Man page
dipper.males Man page
huggins Man page
huggins.estim Man page
ivar Man page
lines.cjs Man page
mra Man page
mra-package Man page
mra.control Man page
plot.cjs Man page
plot.nhat Man page
predict.cjs Man page
print.cjs Man page
print.hug Man page
print.nhat Man page
residuals.cjs Man page
tvar Man page

Files

src
src/Mrawin.f90
NAMESPACE
data
data/dipper.histories.rda
data/dipper.males.rda
data/dipper.data.rda
R
R/F.sat.lik.R
R/F.3d.model.matrix.r
R/F.cr.model.avg.r
R/ivar.R
R/mra.control.r
R/print.cjs.R
R/residuals.cjs.R
R/lines.cjs.R
R/print.hug.R
R/F.huggins.estim.R
R/plot.nhat.r
R/F.step.cjs.r
R/print.nhat.R
R/F.cjs.estim.R
R/F.cjs.covars.R
R/F.cr.model.matrix.R
R/F.update.df.r
R/F.cjs.gof.R
R/predict.cjs.R
R/plot.cjs.R
R/F.cjs.simulate.r
R/zzz.R
R/tvar.r
R/F.fit.table.r
vignettes
vignettes/Bromaghin_etal_2013_OJE.pdf
MD5
DESCRIPTION
man
man/F.fit.table.Rd
man/plot.nhat.Rd
man/F.cr.model.avg.Rd
man/F.update.df.Rd
man/F.huggins.estim.Rd
man/F.3d.model.matrix.Rd
man/F.cjs.gof.Rd
man/print.nhat.Rd
man/print.cjs.Rd
man/F.cjs.estim.Rd
man/lines.cjs.Rd
man/tvar.Rd
man/mra.control.Rd
man/plot.cjs.Rd
man/F.cjs.simulate.Rd
man/F.step.cjs.Rd
man/F.sat.lik.Rd
man/residuals.cjs.Rd
man/mra-package.Rd
man/predict.cjs.Rd
man/dipper.data.Rd
man/F.cjs.covars.Rd
man/print.hug.Rd
man/ivar.Rd
man/F.cr.model.matrix.Rd
mra documentation built on April 14, 2017, 11:50 a.m.

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