msap: Statistical analysis for Methylation-sensitive Amplification Polymorphism data

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Statistical Analyses of Methylation-sensitive Amplification Polymorphism (MSAP) assays.

Author
Andres Perez-Figueroa [aut, cre]
Date of publication
2014-05-09 18:30:25
Maintainer
Andres Perez-Figueroa <anpefi@uvigo.es>
License
GPL (>= 2)
Version
1.1.8
URLs

View on CRAN

Man pages

methStatusEval
classify a locus as either MSL or NML.
msap
Diversity analysis of MSAP data
pcoa
Principal Coordinate Analyses
polymorphic
Checks polymorphic state
repMet
Report methylation levels
rmsap-package
Statistical Analyses for Methylation Sensitive Amplification...
shannon
Shannon Index of phenotypic diversity

Files in this package

msap
msap/inst
msap/inst/CITATION
msap/inst/doc
msap/inst/doc/msap.pdf
msap/inst/doc/msap.R
msap/inst/doc/msap.Rnw
msap/NAMESPACE
msap/R
msap/R/shannon.R
msap/R/repMet.R
msap/R/polymorphic.R
msap/R/methStatusEval.R
msap/R/pcoa.R
msap/R/redundant.R
msap/R/msap.R
msap/R/diffAmova.R
msap/vignettes
msap/vignettes/example.csv
msap/vignettes/datafile.png
msap/vignettes/csvfile.png
msap/vignettes/msap.Rnw
msap/MD5
msap/build
msap/build/vignette.rds
msap/DESCRIPTION
msap/man
msap/man/msap.Rd
msap/man/rmsap-package.Rd
msap/man/shannon.Rd
msap/man/repMet.Rd
msap/man/methStatusEval.Rd
msap/man/polymorphic.Rd
msap/man/pcoa.Rd