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msigdbr: MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format
Provides the 'Molecular Signatures Database' (MSigDB) gene sets typically used with the 'Gene Set Enrichment Analysis' (GSEA) software (Subramanian et al. 2005 <doi:10.1073/pnas.0506580102>, Liberzon et al. 2015 <doi:10.1016/j.cels.2015.12.004>, Castanza et al. 2023 <doi:10.1038/s41592-023-02014-7>) as an R data frame. The package includes the human genes as listed in MSigDB as well as the corresponding symbols and IDs for frequently studied model organisms such as mouse, rat, pig, fly, and yeast.
Getting started
Browse package contents
Package details |
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| Author | Igor Dolgalev [aut, cre] (<https://orcid.org/0000-0003-4451-126X>) |
| Maintainer | Igor Dolgalev <igor.dolgalev@nyumc.org> |
| License | MIT + file LICENSE |
| Version | 10.0.1 |
| URL | https://igordot.github.io/msigdbr/ |
| Package repository | View on CRAN |
| Installation |
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