msigdbr: MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format

Provides the 'Molecular Signatures Database' (MSigDB) gene sets typically used with the 'Gene Set Enrichment Analysis' (GSEA) software (Subramanian et al. 2005 <doi:10.1073/pnas.0506580102>, Liberzon et al. 2015 <doi:10.1016/j.cels.2015.12.004>) in a standard R data frame with key-value pairs. Included are the original human gene symbols and Entrez IDs as well as the equivalents for various frequently studied model organisms such as mouse, rat, pig, fly, and yeast.

Package details

AuthorIgor Dolgalev [aut, cre]
MaintainerIgor Dolgalev <[email protected]>
LicenseMIT + file LICENSE
Version6.2.1
URL https://github.com/igordot/msigdbr
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("msigdbr")

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msigdbr documentation built on May 1, 2019, 6:31 p.m.