like_CKMR: Likelihood for CKMR

In multiSA: Multi-Stock Assessment

Likelihood for CKMR

Description

Returns the log-likelihood for a set of pairwise comparisons. For a parent-offspring pair, a comparison is defined by the capture year of parent, capture age of parent, and birth year of offspring. For a half-sibling pair, a comparison is defined by the cohort year of each sibling. Binomial and Poisson distributions are supported (Conn et al. 2020).

Usage

like_CKMR(n, m, p, type = c("binomial", "poisson"))

Arguments

n	The number of pairwise comparisons
m	The number of kinship matches
p	The probability of kinship match
type	The statistical distribution for the likelihood calculation

Value

Numeric representing the log-likelihood.

References

Conn, P.B. et al. 2020. Robustness of close-kin mark-recapture estimators to dispersal limitation and spatially varying sampling probabilities. Ecol. Evol. 10: 5558-5569. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1002/ece3.6296")}

See Also

calc_POP() calc_HSP()

multiSA documentation built on March 21, 2026, 1:06 a.m.