mutationtypes-package: mutationtypes: Validate and Convert Mutational Impacts Using...
In mutationtypes: Validate and Convert Mutational Impacts Using Standard Genomic Dictionaries
mutationtypes-package R Documentation
mutationtypes: Validate and Convert Mutational Impacts Using Standard Genomic Dictionaries
Description
Check concordance of a vector of mutation impacts with standard dictionaries such as Sequence Ontology (SO) http://www.sequenceontology.org/, Mutation Annotation Format (MAF) https://docs.gdc.cancer.gov/Encyclopedia/pages/Mutation_Annotation_Format_TCGAv2/ or Prediction and Annotation of Variant Effects (PAVE) https://github.com/hartwigmedical/hmftools/tree/master/pave. It enables conversion between SO/PAVE and MAF terms and selection of the most severe consequence where multiple ampersand (&) delimited impacts are given.
Author(s)
Maintainer: Sam El-Kamand sam.elkamand@gmail.com (ORCID)
Other contributors:
Children's Cancer Institute Australia [copyright holder]
See Also
Useful links:
mutationtypes documentation built on May 29, 2024, 2:22 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| mutationtypes-package | R Documentation |
mutationtypes: Validate and Convert Mutational Impacts Using Standard Genomic Dictionaries
Description
Check concordance of a vector of mutation impacts with standard dictionaries such as Sequence Ontology (SO) http://www.sequenceontology.org/, Mutation Annotation Format (MAF) https://docs.gdc.cancer.gov/Encyclopedia/pages/Mutation_Annotation_Format_TCGAv2/ or Prediction and Annotation of Variant Effects (PAVE) https://github.com/hartwigmedical/hmftools/tree/master/pave. It enables conversion between SO/PAVE and MAF terms and selection of the most severe consequence where multiple ampersand (&) delimited impacts are given.
Author(s)
Maintainer: Sam El-Kamand sam.elkamand@gmail.com (ORCID)
Other contributors:
Children's Cancer Institute Australia [copyright holder]
See Also
Useful links:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.