mvcluster: Multi-View Clustering

Implementation of multi-view bi-clustering algorithms. When a sample is characterized by two or more sets of input features, it creates multiple data matrices for the same set of examples, each corresponding to a view. For instance, individuals who are diagnosed with a disorder can be described by their clinical symptoms (one view) and their genomic markers (another view). Rows of a data matrix correspond to examples and columns correspond to features. A multi-view bi-clustering algorithm groups examples (rows) consistently across the views and simultaneously identifies the subset of features (columns) in each view that are associated with the row groups. This mvcluster package includes three such methods. (1) MVSVDL1: multi-view bi-clustering based on singular value decomposition where the left singular vectors are used to identify row clusters and the right singular vectors are used to identify features (columns) for each row cluster. Each singular vector is regularized by the L1 vector norm. (2) MVLRRL0: multi-view bi-clustering based on sparse low rank representation (i.e., matrix approximation) where the decomposed components are regularized by the so-called L0 vector norm (which is not really a vector norm). (3) MVLRRL1: multi-view bi-clustering based on sparse low rank representation (i.e., matrix approximation) where the decomposed components are regularized by the L1 vector norm.

AuthorJiangwen Sun, Jin Lu, Tingyang Xu, Joseph Muller, Jinbo Bi
Date of publication2016-04-03 16:31:05
MaintainerJiangwen Sun <javon@engr.uconn.edu>
LicenseGPL (>= 3)
Version1.0
http://www.labhealthinfo.uconn.edu/multi-view-analytics/

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Files in this package

mvcluster
mvcluster/src
mvcluster/src/Makevars
mvcluster/src/MvLrmaL0.cpp
mvcluster/src/MvLrmaL0.h
mvcluster/src/MvBiClus.cpp
mvcluster/src/MvClus.h
mvcluster/src/cluster.h
mvcluster/src/MvBiClus.h
mvcluster/src/utils.h
mvcluster/src/MvSsvd.cpp
mvcluster/src/utils.cpp
mvcluster/src/main.cpp
mvcluster/src/MvSsvd.h
mvcluster/src/MvLrmaL1.h
mvcluster/src/Objective.h
mvcluster/src/cluster.cpp
mvcluster/src/MvClus.cpp
mvcluster/src/Makevars.win
mvcluster/src/RcppExports.cpp
mvcluster/src/MvLrmaL1.cpp
mvcluster/NAMESPACE
mvcluster/data
mvcluster/data/phe.rda
mvcluster/data/gen.rda
mvcluster/data/view1.rda
mvcluster/data/view2.rda
mvcluster/R
mvcluster/R/RcppExports.R
mvcluster/MD5
mvcluster/DESCRIPTION
mvcluster/man
mvcluster/man/view2.Rd mvcluster/man/phe.Rd mvcluster/man/mvlrrl0.Rd mvcluster/man/view1.Rd mvcluster/man/gen.Rd mvcluster/man/mvsvdl1.Rd mvcluster/man/mvlrrl1.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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