spatialTIME_summary_functions: 'spatialTIME' summary function extraction

In mxfda: A Functional Data Analysis Package for Spatial Single Cell Data

spatialTIME summary function extraction

Description

spatialTIME summary function extraction

Usage

spatialTIME_summary_functions(
  mxFDAobject,
  metric = "uni k",
  markers = NULL,
  r_range = 0:100,
  num_permutations = 50,
  edge_correction = "trans",
  permute = TRUE,
  workers = 1,
  xloc = "x",
  yloc = "y"
)

Arguments

mxFDAobject	object of class mxFDA for which to calculate summary functions
metric	string vector with combination of uni/bi k/g
markers	column names of spatial
r_range	vector of radii to calculate metrics
num_permutations	integer for the number of permutations to perform
edge_correction	character vector of length 1 or 2 depending on the metrics for edge corrections to perform
permute	logical whether to permute CSR or not. Required TRUE for Nearest Neighbor G
workers	integer for number of cores to use to calculate derived variables
xloc, yloc	columns in the spatial data which to use for point locations

Details

Value

mxFDA object with the summary function slots filled according to input metric

Author(s)

Alex Soupir [e-mail]

Examples

# example code

mxfda documentation built on April 3, 2025, 10:25 p.m.