plot_tb_tree: Plot a Phylogenetic Tree with TB Lineage Colors
In mycolorsTB: Color Palettes for Mycobacterium Tuberculosis Data Visualization
plot_tb_tree R Documentation
Plot a Phylogenetic Tree with TB Lineage Colors
Description
Reads a tree in Newick format and plots it using ggtree, coloring tips with the mycolors palette.
Usage
plot_tb_tree(newick_text)
Arguments
newick_text
A character string with the tree in Newick format.
Value
A ggplot object representing the phylogenetic tree.
Examples
tree_text <- "(L8,((L1,(L7,(L4,(L2,L3)))),(L5,((A2,(A3,A4)),(A1,(L10,(L6,L9)))))));"
plot_tb_tree(tree_text)
mycolorsTB documentation built on Aug. 8, 2025, 6:35 p.m.
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| plot_tb_tree | R Documentation |
Plot a Phylogenetic Tree with TB Lineage Colors
Description
Reads a tree in Newick format and plots it using ggtree, coloring tips with the mycolors palette.
Usage
plot_tb_tree(newick_text)
Arguments
newick_text |
A character string with the tree in Newick format. |
Value
A ggplot object representing the phylogenetic tree.
Examples
tree_text <- "(L8,((L1,(L7,(L4,(L2,L3)))),(L5,((A2,(A3,A4)),(A1,(L10,(L6,L9)))))));"
plot_tb_tree(tree_text)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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