nCal: Nonlinear Calibration

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Performs nonlinear calibration and curve fitting for data from Luminex, RT-PCR, ELISA, RPPA etc. Its precursor is Ruminex.

Author
Youyi Fong <yfong@fhcrc.org>, Krisztian Sebestyen <ksebestyen@gmail.com>, Xuesong Yu <xyu@scharp.org>
Date of publication
2016-07-31 19:22:48
Maintainer
Youyi Fong <yfong@fhcrc.org>
License
GPL (>= 2)
Version
2016.7-31

View on CRAN

Man pages

5PL
Functions Related to 5PL Function
bcrm
Bayesian Concentration-Response Model
crm.fit
Fit Concentration Response Model
dat.QIL3
An example for hierarchical modeling used in Fong, Wakefield,...
drm.fit
Fit drm
elisa.R.gh
ELISA prior for gh Parameterization
getConc
Concentration Estimation
get.S1
Compute a measure of distance between two curves.
gnls.fit
Fit with gnls function
hier.model.ex.2
An example for hierarchical modeling used in Fong, Yu et al.
ncal
Main function for the nCal package
p.eotaxin
5PL parameters from an Eotaxin dataset.
plot5PL
Plot a 5PL function
read.luminex.xls
Read a Luminex File

Files in this package

nCal
nCal/inst
nCal/inst/jags_script
nCal/inst/jags_script/gh_norm_4pl.jags
nCal/inst/jags_script/gh_t4_4pl.jags
nCal/inst/jags_script/gh_t4.jags
nCal/inst/jags_script/classical_norm.jags
nCal/inst/jags_script/gh_tar1.jags
nCal/inst/jags_script/classical_replicate_re.jags
nCal/inst/jags_script/desktop.ini
nCal/inst/jags_script/gh_norm.jags
nCal/inst/jags_script/classical_t4.jags
nCal/inst/jags_script/gh_mixnorm.jags
nCal/inst/jags_script/classical_lar1.jags
nCal/inst/jags_script/gh_mix2.jags
nCal/inst/jags_script/classical_mixnorm.jags
nCal/inst/jags_script/gh_lar1.jags
nCal/inst/jags_script/classical_tar1.jags
nCal/inst/jags_script/gh_replicate_re.jags
nCal/inst/misc
nCal/inst/misc/02-14A22-IgA-Biotin.xls
nCal/inst/misc/desktop.ini
nCal/inst/misc/02-14A22-IgA-Biotin-short.xls
nCal/inst/misc/02-14A22-IgA-Biotin-tiny.xls
nCal/inst/otherTests
nCal/inst/otherTests/desktop.ini
nCal/inst/otherTests/performance_tests.R
nCal/inst/doc
nCal/inst/doc/desktop.ini
nCal/inst/doc/nCal-vignette.pdf
nCal/inst/doc/nCal-vignette.R
nCal/inst/doc/nCal-vignette.Rnw
nCal/inst/unitTests
nCal/inst/unitTests/runRUnitTests.R
nCal/inst/unitTests/Makefile
nCal/inst/unitTests/runit.bcrm.R
nCal/inst/unitTests/runit.5PL.R
nCal/inst/unitTests/report.txt
nCal/inst/unitTests/desktop.ini
nCal/inst/unitTests/runit.ncal.R
nCal/tests
nCal/tests/doRUnit.R
nCal/NAMESPACE
nCal/data
nCal/data/dat.QIL3.rda
nCal/data/hierarchical_modeling_example_2.rda
nCal/data/elisa.prior.rda
nCal/data/p.eotaxin.rda
nCal/R
nCal/R/gnls_fit.R
nCal/R/5pl_parameterization_calculus.R
nCal/R/crm.fit.R
nCal/R/read.luminex.xls.R
nCal/R/glspl.R
nCal/R/sysdata.rda
nCal/R/mle.R
nCal/R/inla.R
nCal/R/bcrm.R
nCal/R/5pl.R
nCal/R/drm.fit.R
nCal/R/ncalGUI.R
nCal/R/ssfct.R
nCal/R/ncal.R
nCal/vignettes
nCal/vignettes/nCal-vignette.bib
nCal/vignettes/nCal-vignette.Rnw
nCal/MD5
nCal/build
nCal/build/vignette.rds
nCal/DESCRIPTION
nCal/ChangeLog
nCal/man
nCal/man/gnls.fit.Rd
nCal/man/p.eotaxin.Rd
nCal/man/bcrm.Rd
nCal/man/getConc.Rd
nCal/man/ncal.Rd
nCal/man/crm.fit.Rd
nCal/man/hier.model.ex.2.Rd
nCal/man/plot5PL.Rd
nCal/man/drm.fit.Rd
nCal/man/dat.QIL3.Rd
nCal/man/get.S1.Rd
nCal/man/read.luminex.xls.Rd
nCal/man/elisa.R.gh.Rd
nCal/man/5PL.Rd