nCal: Nonlinear Calibration

Performs nonlinear calibration and curve fitting for data from Luminex, RT-PCR, ELISA, RPPA etc. Its precursor is Ruminex.

Install the latest version of this package by entering the following in R:
install.packages("nCal")
AuthorYouyi Fong <yfong@fhcrc.org>, Krisztian Sebestyen <ksebestyen@gmail.com>, Xuesong Yu <xyu@scharp.org>
Date of publication2016-07-31 19:22:48
MaintainerYouyi Fong <yfong@fhcrc.org>
LicenseGPL (>= 2)
Version2016.7-31

View on CRAN

Functions

bcrm Man page
cla2ed50 Man page
cla2ed50b Man page
cla2gh Man page
coef.bcrm Man page
coef.crm Man page
crm.fit Man page
dat.QIL3 Man page
deviance.crm Man page
drm.fit Man page
ed502cla Man page
ed50b2cla Man page
ED5PL Man page
elisa.mean.distr.gh Man page
elisa.R.gh Man page
FivePL.t Man page
FivePL.t.func Man page
FivePL.t.inv Man page
FivePL.t.inv.func Man page
FivePL.x Man page
FivePL.x.inv Man page
FivePL.x.inv.func Man page
FourPL.t.func Man page
FourPL.x Man page
FourPL.x.inv Man page
get.abc Man page
get.abs.dev Man page
getConc Man page
get.curve.param.list Man page
get.S1 Man page
get.S2 Man page
get.single.fit Man page
getVarComponent.bcrm Man page
getVarComponent.drc Man page
gh2cla Man page
gnls.fit Man page
hier.model.ex.2 Man page
lines5PL Man page
lines.crm Man page
ncal Man page
nCal Man page
ncal.character Man page
ncal.formula Man page
ncalGUI Man page
p.eotaxin Man page
plot5PL Man page
plot.bcrm Man page
print.bcrm Man page
print.crm Man page
read.luminex.xls Man page
rumi Man page
simulate1curve Man page
vcov.bcrm Man page
vpl1.deriv Man page
vpl1.deriv.func Man page
vpl2.deriv Man page
vpl2.deriv.func Man page
vpl3.deriv Man page
vpl3.deriv.func Man page

Files

inst
inst/jags_script
inst/jags_script/gh_norm_4pl.jags
inst/jags_script/gh_t4_4pl.jags
inst/jags_script/gh_t4.jags
inst/jags_script/classical_norm.jags
inst/jags_script/gh_tar1.jags
inst/jags_script/classical_replicate_re.jags
inst/jags_script/desktop.ini
inst/jags_script/gh_norm.jags
inst/jags_script/classical_t4.jags
inst/jags_script/gh_mixnorm.jags
inst/jags_script/classical_lar1.jags
inst/jags_script/gh_mix2.jags
inst/jags_script/classical_mixnorm.jags
inst/jags_script/gh_lar1.jags
inst/jags_script/classical_tar1.jags
inst/jags_script/gh_replicate_re.jags
inst/misc
inst/misc/02-14A22-IgA-Biotin.xls
inst/misc/desktop.ini
inst/misc/02-14A22-IgA-Biotin-short.xls
inst/misc/02-14A22-IgA-Biotin-tiny.xls
inst/otherTests
inst/otherTests/desktop.ini
inst/otherTests/performance_tests.R
inst/doc
inst/doc/desktop.ini
inst/doc/nCal-vignette.pdf
inst/doc/nCal-vignette.R
inst/doc/nCal-vignette.Rnw
inst/unitTests
inst/unitTests/runRUnitTests.R
inst/unitTests/Makefile
inst/unitTests/runit.bcrm.R inst/unitTests/runit.5PL.R
inst/unitTests/report.txt
inst/unitTests/desktop.ini
inst/unitTests/runit.ncal.R
tests
tests/doRUnit.R
NAMESPACE
data
data/dat.QIL3.rda
data/hierarchical_modeling_example_2.rda
data/elisa.prior.rda
data/p.eotaxin.rda
R
R/gnls_fit.R R/5pl_parameterization_calculus.R R/crm.fit.R R/read.luminex.xls.R R/glspl.R
R/sysdata.rda
R/mle.R R/inla.R R/bcrm.R R/5pl.R R/drm.fit.R R/ncalGUI.R R/ssfct.R R/ncal.R
vignettes
vignettes/nCal-vignette.bib
vignettes/nCal-vignette.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
ChangeLog
man
man/gnls.fit.Rd man/p.eotaxin.Rd man/bcrm.Rd man/getConc.Rd man/ncal.Rd man/crm.fit.Rd man/hier.model.ex.2.Rd man/plot5PL.Rd man/drm.fit.Rd man/dat.QIL3.Rd man/get.S1.Rd man/read.luminex.xls.Rd man/elisa.R.gh.Rd man/5PL.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.