Man pages for nbTransmission
Naive Bayes Transmission Analysis
| clusterInfectors | Clusters the infectors based on their transmission... |
| estimateR | Estimates the effective reproductive number |
| estimateRi | Estimates individual-level reproductive numbers |
| estimateRt | Estimates time-level reproductive numbers |
| estimateRtAvg | Estimates the average effective reproductive number |
| estimateSI | Estimates the generation/serial interval distribution |
| indData | Individual-level simulated outbreak dataset |
| indToPair | Transforms a dataset of individuals to a dataset of pairs |
| nbHeatmap | Plots a heatmap of the relative transmission probabilities |
| nbNetwork | Plots a network of the relative transmission probabilities |
| nbProbabilities | Estimates relative transmission probabilities |
| nbResults | Dataset with results of 'nbProbabilities' |
| pairData | Pair-level simulated outbreak dataset |
| performNB | Performs naive bayes classification |
| performPEM | Executes the PEM algorthim to estimate the generation/serial... |
| plotRt | Creates a plot of the effective reproductive number |
