nettools: A Network Comparison Framework
Version 1.0.1

A collection of network inference methods for co-expression networks, quantitative network distances and a novel framework for network stability analysis.

Browse man pages Browse package API and functions Browse package files

AuthorMichele Filosi [aut, cre], Roberto Visintainer [aut], Samantha Riccadonna [aut], Giuseppe Jurman [ctb], Cesare Furlanello [ctb]
Date of publication2014-09-12 16:16:26
MaintainerMichele Filosi <filosi@fbk.eu>
LicenseCC BY-NC-SA 4.0
Version1.0.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("nettools")

Man pages

mat2adj: From Data Matrix to Adjacency Matrix
netdist: Distances between network
netSI: Network Stability Indicators
nettools-package: A Network Comparison Framework

Functions

AdjARACNE Source code
AdjCLR Source code
AdjDTWMIC Source code
AdjMINE Source code
AdjMINEFDR Source code
AdjTOM Source code
AdjWGCNA Source code
AdjWGCNAFDR Source code
Adjbicor Source code
AdjbicorFDR Source code
Adjcor Source code
HIM Man page
Hamming Man page
Ipsen Man page
K Source code
LL Source code
Lap Source code
MM Source code
NetTools Man page
WW Source code
WWp Source code
ZZ Source code
checkvar Source code
compute.indicator Source code
fdrrun Source code
g2adj Source code
g2adj.data.frame Source code
g2adj.igraph Source code
g2adj.matrix Source code
ham.dir Source code
ham.undir Source code
hamming Man page Source code
him Source code
ipsen Man page Source code
ipsen_minus_one Source code
ipsen_minus_one_dir Source code
lorentz Source code
mat2adj Man page Source code
mat2adj,data.frame-method Man page
mat2adj,mat2adj.data.frame Man page
mat2adj,mat2adj.matrix Man page
mat2adj,matrix-method Man page
mat2adj-methods Man page
mat2adj.data.frame Man page Source code
mat2adj.data.frame,data.frame-method Man page
mat2adj.default Man page Source code
mat2adj.matrix Man page Source code
netSI Man page Source code
netTools Man page
netdist Man page Source code
netdist,Matrix-method Man page
netdist,data.frame-method Man page
netdist,igraph-method Man page
netdist,list-method Man page
netdist,matrix-method Man page
netdist.Matrix Man page
netdist.igraph Man page
netdist.list Man page Source code
netdist.matrix Man page Source code
netsiS Source code
netsiSI Source code
netsiSd Source code
netsiSw Source code
nettools Man page
nettools-package Man page
optimal_gamma Source code
optimal_gamma_dir Source code
resamplingIDX Source code
rho Source code
spec Source code
transfmat Source code

Files

tests
tests/test.Rout
tests/test.R
NAMESPACE
R
R/AllGenerics.R
R/mat2adj.R
R/adj_function.R
R/netdist.R
R/netSI.R
R/hamming_function.R
R/ipsen_function.R
README.md
MD5
DESCRIPTION
man
man/nettools-package.Rd
man/netdist.Rd
man/netSI.Rd
man/mat2adj.Rd
nettools documentation built on May 19, 2017, 2:46 p.m.