discov: True discoveries

In newFocus: True Discovery Guarantee by Combining Partial Closed Testings

Description

True discoveries calculated by the partial closed testing

Usage

discov(response, alternative, null, data, maxit = 0, alpha)

Arguments

response	The response variable
alternative	The alternative hypothesis, which is a character vector, i.e. a set of genes
null	The null hypothesis
data	A data frame with response and all covariates included
maxit	The maximal number of repetitions prespecified by user
alpha	The significance level

Value

It will return a non-negative integer: the lower bound for the number of true discovereis of the alternative gene set.

Author(s)

Ningning Xu

newFocus documentation built on July 5, 2021, 5:09 p.m.