Man pages for ngstk
Next-Generation Sequencing (NGS) Data Analysis Toolkit
| batch_file | Process the input file a batch of one batch |
| format_filenames | Function to format filenames that can be used to unify the... |
| format_pp_meta_age | To format ProteinPaint input meta data of age |
| format_pp_meta_fusions | To format ProteinPaint input meta data of gender |
| format_pp_meta_gender | To format ProteinPaint input meta data of gender |
| fusions2oncoprinter | Function to convert fusion data to cbioportal Oncoprinter... |
| fusions2pp | Function to convert fusion data to ProteinPaint format. |
| fusions2pp_meta | Function to convert fusion data to ProteinPaint heatmap meta... |
| fusions_filter | Fusions handler_data filter that can be used to prepare the... |
| get_files_ctime | Function to check file create time and according the... |
| get_files_mtime | Function to check file last change time and according the... |
| get_pp_samplegroup | Function to get samplegroup file that can be pass to... |
| get_split_seqs | Function to calculate the split regions by sections and total... |
| make_option | Functions to enable our OptionParser to recognize specific... |
| merge_table_files | Util function to merge multiple table files. |
| muts2mutation_mapper | Function to convert mutation data to cbioportal... |
| muts2oncoprinter | Function to convert mutation data to cbioportal Oncoprinter... |
| muts2pp | Function to convert mutation data to ProteinPaint format. |
| ngstk | ngstk can be used to facilitate the analysis of NGS data,... |
| opt_parser | A function to create an instance of a parser object with... |
| par_download | Function to download multiple file at the same time. |
| parse_args | Parse command line options (optparse). |
| parse_args2 | Parse command line options. |
| print_help | Printing an usage message from an OptionParser object |
| rbin | Function to generate executable files for R package |
| set_colors | Function to get a series defined theme colors |
| set_tools | Function to generate tools path object |
| show_handlers | Function to show all avaliabe handler function |
| show_mhandlers | Function to show all avaliabe mhandler function |
| split_col_data | Data split function by colum |
| split_list | Function to split list |
| split_row_data | Data split function by row |
| split_row_file | Function to split big file to a series small files (by row) |
| supress_any_message | suppressWarnings(suppressMessages(...)) |
| time_stamp | Function to generate time stamp in the files name or... |
