README.md

In nhppp: Simulating Nonhomogeneous Poisson Point Processes

nhppp

nhppp is a package for simulating events from one dimensional nonhomogeneous Poisson point processes (NHPPPs). Its functions are based on three algorithms that provably sample from a target NHPPP: the time-transformation of a homogeneous Poisson process (of intensity one) via the inverse of the integrated intensity function; the generation of a Poisson number of order statistics from a fixed density function; and the thinning of a majorizing NHPPP via an acceptance-rejection scheme. It was developed to provide fast and memory efficient functions for discrete event and statistical simulations. For a description of the algorithms and a numerical comparison with other R packages, see Trikalinos and Sereda (2024), accessible at https://arxiv.org/abs/2402.00358.

Installation

You can install the release version of nhppp from CRAN with:

install.packages("nhppp")

You can install the development version of nhppp from GitHub with:

# install.packages("devtools")
devtools::install_github("bladder-ca/nhppp")

Example

These examples use the generic function draw(), which is a wrapper for the packages specific functions. draw() is a non-vectorized function, but nhppp includes vectorized functions that are fast and have small memory footprint.

Consider the time varying intensity function $\lambda(t) = e^{(0.2t)} (1 + \sin t)$, which is a sinusoidal intensity function with an exponential amplitude. To draw samples over the interval $(0, 6\pi]$ execute

l <- function(t) (1 + sin(t)) * exp(0.2 * t)
nhppp::draw(
  lambda = l,
  line_majorizer_intercept = l(6 * pi),
  line_majorizer_slope = 0,
  t_min = 0,
  t_max = 6 * pi
) |>
  head(n = 20)
#>  [1] 1.197587 1.238620 1.497499 1.713629 1.761914 2.256739 2.537528 3.622938
#>  [9] 5.822574 6.064265 6.645696 6.651551 6.684603 6.875765 6.891348 7.130680
#> [17] 7.446557 7.453139 7.545474 7.557381

where line_majorizer_intercept and line_majorizer_slope define a majorizer constant.

When available, the integrated intensity function $\Lambda(t) = \int_0^t \lambda(s) \ ds$ and its inverse $\Lambda^{-1}(z)$ result in faster simulation times. For this example, $\Lambda(t) = \frac{e^{0.2t}(0.2 \sin t - \cos t)+1}{1.04} + \frac{e^{0.2t} - 1}{0.2}$; $\Lambda^{-1}(z)$ is constructed numerically upfront (or can be calculated numerically by the function, at a computational cost).

L <- function(t) {
  exp(0.2 * t) * (0.2 * sin(t) - cos(t)) / 1.04 +
    exp(0.2 * t) / 0.2 - 4.038462
}
Li <- stats::approxfun(x = L(seq(0, 6 * pi, 10^-3)), y = seq(0, 6 * pi, 10^-3), rule = 2)

nhppp::draw(Lambda = L, Lambda_inv = Li, t_min = 0, t_max = 6 * pi) |>
  head(n = 20)
#>  [1] 0.01152846 0.23558627 0.32924742 0.49921843 0.63509297 1.36677413
#>  [7] 2.38941548 3.19511655 3.28049866 4.62140995 5.96916564 6.37504015
#> [13] 6.68283108 6.76577784 7.12919141 7.29249262 7.38665270 7.92953383
#> [19] 7.94791744 7.96591106

Vectorized functions

See the vignette “Log-linear times”.

nhppp documentation built on Oct. 30, 2024, 9:28 a.m.