Man pages for nimbleSCR
Spatial Capture-Recapture (SCR) Methods Using 'nimble'
| calculateDensity | NIMBLE function to calculate the density of individuals alive... |
| calcWindowSizes | Window size calculation |
| dbernppAC | Bernoulli point process for the distribution of activity... |
| dbernppACmovement_exp | Bernoulli point process for activity center movement... |
| dbernppACmovement_normal | Bernoulli point process for activity center movement (normal... |
| dbernppDetection_normal | Bernoulli point process detection model |
| dbernppLocalACmovement_exp | Local evaluation of a Bernoulli point process for activity... |
| dbernppLocalACmovement_normal | Local evaluation of a Bernoulli point process for activity... |
| dbernppLocalDetection_normal | Local evaluation for a Bernoulli point process detection... |
| dbinomLocal_exp | Local evaluation of a binomial SCR observation process |
| dbinomLocal_normal | Local evaluation of a binomial SCR detection process |
| dbinomLocal_normalPlateau | Local evaluation of a binomial SCR observation process |
| dbinom_vector | Vectorized binomial distribution |
| dcatState1Alive1Dead | Density and random generation of a categorical distribution... |
| dcatState1Alive2Dead | Density and random generation of a categorical distribution... |
| dcatState2Alive2Dead | Density and random generation of a categorical distribution... |
| dDispersal_exp | Bivariate exponential dispersal distribution for activity... |
| dHabitatMask | Ones trick distribution for irregular habitat shapes |
| dmultiLocal_normal | Local evaluation of a multinomial SCR detection process |
| dnormalizer | Normalizing constant generator |
| dpoisLocal_normal | Local evaluation of a Poisson SCR detection process |
| dpoisppAC | Poisson point process for the distribution of activity... |
| dpoisppDetection_normal | Poisson point process detection model |
| dpoisppLocalDetection_normal | Local evaluation for a Poisson point process detection model |
| getHomeRangeArea | Computation of home range radius and area |
| getLocalObjects | Local Objects Identification |
| getMidPointNodes | Generate midpoint integration nodes |
| getSparseY | Sparse Matrix Preparation |
| getWindowCoords | Get lower and upper windows coordinates |
| getWindowIndex | Get window index |
| integrateIntensity_exp | Integrate the multivariate exponential intensity |
| integrateIntensityLocal_exp | Integrate the multivariate exponential intensity with local... |
| integrateIntensityLocal_normal | Integrate the multivariate normal intensity with local... |
| integrateIntensity_normal | Integrate the multivariate normal intensity |
| localTrapCalculations | Local Trap Calculations |
| makeConstantNimbleFunction | 'nimble' constant function generator |
| marginalVoidProbIntegrand | Integrand of the marginal void probability integral |
| marginalVoidProbNumIntegration | Marginal void probability |
| sampler_categorical_general | 'nimble' MCMC sampler function for general categorial... |
| scaleCoordsToHabitatGrid | Scale x- and y-coordinates to grid cells coordinates. |
| stratRejectionSampler_exp | Stratified rejection sampler for multivariate exponential... |
| stratRejectionSampler_normal | Stratified rejection sampler for multivariate normal point... |
