Man pages for nimbleSCR
Spatial Capture-Recapture (SCR) Methods Using 'nimble'

calculateDensityNIMBLE function to calculate the density of individuals alive...
calcWindowSizesWindow size calculation
dbernppACBernoulli point process for the distribution of activity...
dbernppACmovement_expBernoulli point process for activity center movement...
dbernppACmovement_normalBernoulli point process for activity center movement (normal...
dbernppDetection_normalBernoulli point process detection model
dbernppLocalACmovement_expLocal evaluation of a Bernoulli point process for activity...
dbernppLocalACmovement_normalLocal evaluation of a Bernoulli point process for activity...
dbernppLocalDetection_normalLocal evaluation for a Bernoulli point process detection...
dbinomLocal_expLocal evaluation of a binomial SCR observation process
dbinomLocal_normalLocal evaluation of a binomial SCR detection process
dbinomLocal_normalPlateauLocal evaluation of a binomial SCR observation process
dbinom_vectorVectorized binomial distribution
dcatState1Alive1DeadDensity and random generation of a categorical distribution...
dcatState1Alive2DeadDensity and random generation of a categorical distribution...
dcatState2Alive2DeadDensity and random generation of a categorical distribution...
dDispersal_expBivariate exponential dispersal distribution for activity...
dHabitatMaskOnes trick distribution for irregular habitat shapes
dmultiLocal_normalLocal evaluation of a multinomial SCR detection process
dnormalizerNormalizing constant generator
dpoisLocal_normalLocal evaluation of a Poisson SCR detection process
dpoisppACPoisson point process for the distribution of activity...
dpoisppDetection_normalPoisson point process detection model
dpoisppLocalDetection_normalLocal evaluation for a Poisson point process detection model
getHomeRangeAreaComputation of home range radius and area
getLocalObjectsLocal Objects Identification
getMidPointNodesGenerate midpoint integration nodes
getSparseYSparse Matrix Preparation
getWindowCoordsGet lower and upper windows coordinates
getWindowIndexGet window index
integrateIntensity_expIntegrate the multivariate exponential intensity
integrateIntensityLocal_expIntegrate the multivariate exponential intensity with local...
integrateIntensityLocal_normalIntegrate the multivariate normal intensity with local...
integrateIntensity_normalIntegrate the multivariate normal intensity
localTrapCalculationsLocal Trap Calculations
makeConstantNimbleFunction'nimble' constant function generator
marginalVoidProbIntegrandIntegrand of the marginal void probability integral
marginalVoidProbNumIntegrationMarginal void probability
sampler_categorical_general'nimble' MCMC sampler function for general categorial...
scaleCoordsToHabitatGridScale x- and y-coordinates to grid cells coordinates.
stratRejectionSampler_expStratified rejection sampler for multivariate exponential...
stratRejectionSampler_normalStratified rejection sampler for multivariate normal point...
nimbleSCR documentation built on Dec. 1, 2022, 1:17 a.m.