gen_pest_table: Makes 'nlmixr2' Parameter Estimate Table for Reporting

In nlmixr2rpt: Templated Word and PowerPoint Reporting of 'nlmixr2' Fitting Results

Makes nlmixr2 Parameter Estimate Table for Reporting

Description

Generates a flextable containting the parameter estimates.

Usage

gen_pest_table(obnd = NULL, fit = NULL, rptdetails = NULL, verbose = TRUE)

Arguments

obnd	onbrand report object to have report elements appended to
fit	nlmixr2 fit object to be reported
rptdetails	object creating when reading in rptyaml file
verbose	Boolean variable when set to TRUE (default) messages will be displayed on the terminal

Value

List with the following elements

• "isgood" - Boolean variable indicating success or failure

• "msgs" - Vector of messages

• "ft" - Parameter estimates as a flextable object

• "df" - Parameter estimates as a data.frame

Examples

library(onbrand)  
obnd = read_template(
 template = system.file(package="nlmixr2rpt", "templates","nlmixr_obnd_template.pptx"),
 mapping  = system.file(package="nlmixr2rpt", "templates","nlmixr_obnd_template.yaml"))

# This will create an example fit object to use in the examples below
fit = fetch_fit_example()

#'# This reads in the report details as well
rptdetails = yaml_read_fit(
 obnd    = obnd,
 rptyaml = system.file(package="nlmixr2rpt", "examples", "report_fit_test.yaml"),
 fit     = fit)$rptdetails

gen_pest_table(obnd = obnd, fit = fit, rptdetails = rptdetails, verbose = TRUE)

nlmixr2rpt documentation built on June 7, 2023, 5:49 p.m.