API for nmfkc
Non-Negative Matrix Factorization with Kernel Covariates

Global functions
.ard.fit Source code
.ari Source code
.boot.onestep Source code
.boot.refit Source code
.boot.summarize Source code
.cluster.criteria Source code
.coef.order.by Source code
.cv.rank.plot Source code
.cv.score Source code
.ecv.make.folds Source code
.ecv.run Source code
.effective.rank Source code
.flow.colors Source code
.flow.place Source code
.init_X_method Source code
.kmeanspp.seed Source code
.nmf.cluster.criteria.coef Source code
.nmf.hard.labels Source code
.nmfkc.net.make_uppertri_folds Source code
.nmfkc.net.mirror_mask Source code
.nmfkc.net.run_once Source code
.nmfkc.net.run_once_bi Source code
.nmfkc.net.signed.run_once Source code
.nmfkc_dot_cluster_nodes Source code
.nmfkc_dot_digits_from_threshold Source code
.nmfkc_dot_format_coef Source code
.nmfkc_dot_header Source code
.nmfkc_dot_penwidth Source code
.nmfkc_dot_sanitize_id Source code
.nmfkc_init_X Source code
.nmfkc_parse_formula Source code
.nmfkc_resolve_formula Source code
.nmfre.dfU.from.lambda Source code
.nmfre.marginal.nll Source code
.nmfre.normalize.X Source code
.nmfre.safe.div Source code
.nmfre.seminmf.X Source code
.nndsvdar Source code
.nnls.mu Source code
.print.fit.statistics Source code
.print.structure.diagnostics Source code
.r.squared.all Source code
.rank.finish Source code
.refit.C.MU Source code
.silhouette.mean Source code
.wild.multipliers Source code
coef.nmf Man page Source code
coef.nmf.sem Man page Source code
fitted.nmf Man page Source code
fitted.nmf.sem Man page Source code
fitted.nmfae Man page Source code
fitted.nmfre Man page Source code
nmf.cluster.criteria Man page Source code
nmf.cluster.flow Man page Source code
nmf.ffb Man page Source code
nmf.ffb.DOT Man page Source code
nmf.ffb.cv Man page Source code
nmf.ffb.inference Man page Source code
nmf.ffb.split Man page Source code
nmf.rrr Man page Source code
nmf.rrr.DOT Man page Source code
nmf.rrr.cv Man page Source code
nmf.rrr.ecv Man page Source code
nmf.rrr.heatmap Man page Source code
nmf.rrr.inference Man page Source code
nmf.rrr.kernel.beta.cv Man page Source code
nmf.rrr.rank Man page Source code
nmf.rrr.rename Man page Source code
nmf.rrr.signed Man page Source code
nmf.rrr.signed.ecv Man page Source code
nmf.rrr.signed.heatmap Man page Source code
nmf.rrr.signed.inference Man page Source code
nmf.rrr.signed.rank Man page Source code
nmf.rrr.signed.rename Man page Source code
nmf.sem Man page Source code
nmf.sem-deprecated Man page
nmf.sem.DOT Man page Source code
nmf.sem.cv Man page Source code
nmf.sem.inference Man page Source code
nmf.sem.split Man page Source code
nmfae Man page Source code
nmfae-deprecated Man page
nmfae.DOT Man page Source code
nmfae.cv Man page Source code
nmfae.ecv Man page Source code
nmfae.heatmap Man page Source code
nmfae.inference Man page Source code
nmfae.kernel.beta.cv Man page Source code
nmfae.rank Man page Source code
nmfae.rename Man page Source code
nmfae.signed Man page Source code
nmfae.signed.ecv Man page Source code
nmfae.signed.heatmap Man page Source code
nmfae.signed.inference Man page Source code
nmfae.signed.rank Man page Source code
nmfae.signed.rename Man page Source code
nmfkc Man page Source code
nmfkc.DOT Man page Source code
nmfkc.ar Man page Source code
nmfkc.ar.DOT Man page Source code
nmfkc.ar.degree.cv Man page Source code
nmfkc.ar.predict Man page Source code
nmfkc.ar.stationarity Man page Source code
nmfkc.ard Man page Source code
nmfkc.bicv Man page Source code
nmfkc.class Man page Source code
nmfkc.consensus Man page Source code
nmfkc.criterion Man page Source code
nmfkc.cv Man page Source code
nmfkc.cv.methods Man page
nmfkc.denormalize Man page Source code
nmfkc.ecv Man page Source code
nmfkc.inference Man page Source code
nmfkc.kernel Man page Source code
nmfkc.kernel.beta.cv Man page Source code
nmfkc.kernel.beta.nearest.med Man page Source code
nmfkc.kernel.gaussian Man page Source code
nmfkc.net Man page Source code
nmfkc.net.DOT Man page Source code
nmfkc.net.ecv Man page Source code
nmfkc.net.inference Man page Source code
nmfkc.net.rank Man page Source code
nmfkc.normalize Man page Source code
nmfkc.rank Man page Source code
nmfkc.residual.plot Man page Source code
nmfkc.signed Man page Source code
nmfkc.signed.cv Man page Source code
nmfkc.signed.ecv Man page Source code
nmfkc.signed.rank Man page Source code
nmfkc.signed.rff Man page Source code
nmfre Man page Source code
nmfre.ecv Man page Source code
nmfre.inference Man page Source code
plot.nmf.cluster.criteria Man page Source code
plot.nmf.cluster.flow Man page Source code
plot.nmf.rank Man page Source code
plot.nmf.sem Man page Source code
plot.nmfae Man page Source code
plot.nmfae.cv Man page Source code
plot.nmfae.ecv Man page Source code
plot.nmfae.kernel.beta.cv Man page Source code
plot.nmfae.signed Man page Source code
plot.nmfkc Man page Source code
plot.nmfkc.DOT Man page Source code
plot.nmfkc.ard Man page Source code
plot.nmfkc.bicv Man page Source code
plot.nmfkc.consensus Man page Source code
plot.nmfkc.cv Man page Source code
plot.nmfkc.ecv Man page Source code
plot.nmfkc.signed Man page Source code
plot.nmfre Man page Source code
plot.nmfre.ecv Man page Source code
plot.predict.nmfae Man page Source code
predict.nmfae Man page Source code
predict.nmfae.signed Man page Source code
predict.nmfkc Man page Source code
predict.nmfkc.signed Man page Source code
predict.nmfre Man page Source code
print.nmf.cluster.criteria Man page Source code
print.nmf.cluster.flow Man page Source code
print.nmf.inference Man page Source code
print.nmf.rank Man page Source code
print.nmfkc.ard Man page Source code
print.nmfkc.bicv Man page Source code
print.nmfkc.consensus Man page Source code
print.nmfkc.cv Man page Source code
print.nmfkc.ecv Man page Source code
print.nmfre.ecv Man page Source code
print.summary.nmf.sem Man page Source code
print.summary.nmfae Man page Source code
print.summary.nmfae.inference Man page Source code
print.summary.nmfae.signed Man page Source code
print.summary.nmfae.signed.inference Man page Source code
print.summary.nmfkc Man page Source code
print.summary.nmfkc.inference Man page Source code
print.summary.nmfkc.net Man page Source code
print.summary.nmfkc.net.inference Man page Source code
print.summary.nmfkc.net.signed Man page Source code
print.summary.nmfkc.signed Man page Source code
residuals.nmf Man page Source code
residuals.nmf.sem Man page Source code
residuals.nmfae Man page Source code
residuals.nmfre Man page Source code
summary.nmf.sem Man page Source code
summary.nmfae Man page Source code
summary.nmfae.inference Man page Source code
summary.nmfae.signed Man page Source code
summary.nmfae.signed.inference Man page Source code
summary.nmfkc Man page Source code
summary.nmfkc.inference Man page Source code
summary.nmfkc.net Man page Source code
summary.nmfkc.net.inference Man page Source code
summary.nmfkc.net.signed Man page Source code
summary.nmfkc.signed Man page Source code
summary.nmfre Man page Source code
nmfkc documentation built on July 14, 2026, 1:07 a.m.