nplplot: Plotting linkage and association results

This package provides routines for plotting linkage and association results along a chromosome, with marker names displayed along the top border. There are also routines for generating BED and BedGraph custom tracks for viewing in the UCSC genome browser. The data reformatting program Mega2 uses this package to plot output from a variety of programs.

AuthorRobert V Baron <rvb5@pitt.edu>, Nandita Mukhopadhyay, Xinyu Tang, Daniel E. Weeks <weeks@pitt.edu>
Date of publication2014-05-01 09:32:57
MaintainerDaniel E. Weeks <weeks@pitt.edu>
LicenseGPL (>= 3)
Version4.5
http://watson.hgen.pitt.edu/register

View on CRAN

Files in this package

nplplot
nplplot/inst
nplplot/inst/extdata
nplplot/inst/extdata/lods1header.R
nplplot/inst/extdata/lods2header.R
nplplot/tests
nplplot/tests/Rallegro.07.R
nplplot/tests/RALLEGRO.07
nplplot/tests/Rallegro.07.Rout
nplplot/tests/RALLEGRO.07.hdr
nplplot/NAMESPACE
nplplot/data
nplplot/data/lods1.txt.gz
nplplot/data/lods2.txt.gz
nplplot/data/lods2header.rda
nplplot/data/lods1header.rda
nplplot/R
nplplot/R/nplplot.R nplplot/R/nplplot.old.R nplplot/R/prepareplot.R nplplot/R/nplplot.multi.R nplplot/R/bedplot.R nplplot/R/genomeplot.R
nplplot/MD5
nplplot/DESCRIPTION
nplplot/man
nplplot/man/nplplot.Rd nplplot/man/genomeplot.Rd nplplot/man/lods2.Rd nplplot/man/nplplot-internal.Rd nplplot/man/prepareplot.Rd nplplot/man/lods1.Rd nplplot/man/nplplot.old.Rd nplplot/man/nplplot.multi.Rd nplplot/man/bedplot.Rd
nplplot/INDEX

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.