summary: Summarize a studbook quality-control error list

In nprcgenekeepr: Genetic Tools for Colony Management

Summarize a studbook quality-control error list

Description

Summarize a studbook quality-control error list

Usage

## S3 method for class 'nprcgenekeeprErr'
summary(object, ...)

## S3 method for class 'nprcgenekeeprGV'
summary(object, ...)

Arguments

object	object of class nprcgenekeeprErr and class list
...	additional arguments for the summary.default statement

Value

Object of class summary.nprcgenekeeprErr

object of class summary.nprcgenekeeprGV

Examples

errorList <- qcStudbook(nprcgenekeepr::pedOne,
  minParentAge = 0,
  reportChanges = TRUE,
  reportErrors = TRUE
)
summary(errorList)
examplePedigree <- nprcgenekeepr::examplePedigree
breederPed <- qcStudbook(examplePedigree,
  minParentAge = 2L,
  reportChanges = FALSE,
  reportErrors = FALSE
)
focalAnimals <- breederPed$id[!(is.na(breederPed$sire) &
  is.na(breederPed$dam)) &
  is.na(breederPed$exit)]
ped <- setPopulation(ped = breederPed, ids = focalAnimals)
trimmedPed <- trimPedigree(focalAnimals, breederPed)
probands <- ped$id[ped$population]
ped <- trimPedigree(probands, ped,
  removeUninformative = FALSE,
  addBackParents = FALSE
)
geneticValue <- reportGV(ped,
  guIter = 50L, # should be >= 1000L
  guThresh = 3L,
  byID = TRUE,
  updateProgress = NULL
)
trimmedGeneticValue <- reportGV(trimmedPed,
  guIter = 50L, # should be >= 1000L
  guThresh = 3L,
  byID = TRUE,
  updateProgress = NULL
)
summary(geneticValue)
summary(trimmedGeneticValue)

nprcgenekeepr documentation built on July 26, 2026, 5:06 p.m.