Man pages for o2ools
Tools for 'outbreaker2'
| augment_linelist | Append summaries of outbreaker results to a linelist |
| entropy | Compute entropy of a categorical variable |
| filter_chain | Filter chain by parameter threshold |
| get_accuracy | Calculate the accuracy of outbreak reconstruction |
| get_consensus | Get the consensus transmission tree |
| get_entropy | Compute the entropy of transmission trees |
| get_Ri | Compute case reproduction numbers (Ri) from outbreaker2... |
| get_si | Compute the serial interval (si) from transmission trees |
| get_trees | Extract posterior transmission trees |
| identify | Replace integers in outbreaker2 output with unique... |
| is_linelist | Check if the object conforms to linelist expectations |
| is_outbreaker_chains | Check if an object is a data frame of class... |
| linelist | Simulated linelist with group labels |
| out | outbreaker2 toy dataset |
| sample.outbreaker_chains | Sample rows from an outbreaker_chains object |
| ttable | Compute the transmission contingency table |
