get_accuracy: Calculate the accuracy of outbreak reconstruction
In o2ools: Tools for 'outbreaker2'
get_accuracy R Documentation
Calculate the accuracy of outbreak reconstruction
Description
Accuracy is defined as the proportion of correctly assigned ancestries across the posterior sample.
Usage
get_accuracy(out, true_tree)
Arguments
out
An object of class outbreaker_chains.
true_tree
A data frame with the true transmission tree, including 'from' and 'to' columns.
Value
A numeric vector of accuracy values for each posterior tree.
Examples
true_tree <- data.frame(from = as.character(outbreaker2::fake_outbreak$ances), to = linelist$id)
get_accuracy(out, true_tree)
o2ools documentation built on June 8, 2025, 10:18 a.m.
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| get_accuracy | R Documentation |
Calculate the accuracy of outbreak reconstruction
Description
Accuracy is defined as the proportion of correctly assigned ancestries across the posterior sample.
Usage
get_accuracy(out, true_tree)
Arguments
out |
An object of class |
true_tree |
A data frame with the true transmission tree, including 'from' and 'to' columns. |
Value
A numeric vector of accuracy values for each posterior tree.
Examples
true_tree <- data.frame(from = as.character(outbreaker2::fake_outbreak$ances), to = linelist$id)
get_accuracy(out, true_tree)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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