conf_mat: Calculate and Visualise a Confusion Matrix

In oHMMed: HMMs with Ordered Hidden States and Emission Densities

Calculate and Visualise a Confusion Matrix

Description

A diagnostic function that tests the reliability of estimation procedures given the inferred transition rates

Usage

conf_mat(N, res, plot = TRUE)

Arguments

N	(numeric) number of simulations
res	(mcmc_hmm_*) simulated MCMC HMM model
plot	(logical) plot confusion matrix. By default TRUE

Details

First the data is simulated given the inferred model parameters and transition rates. Then posterior probabilities are calculated and states are inferred. Finally, the inferred states and simulated states are compared via confusion_matrix function.

Value

confusion_matrix

Examples

if (interactive()) {
  res <- conf_mat(100, example_hmm_mcmc_normal, plot = TRUE) 
}

oHMMed documentation built on May 29, 2024, 2:20 a.m.