occCiteData-class: occCite Data Class
In occCite: Querying and Managing Large Biodiversity Occurrence Datasets
occCiteData-class R Documentation
occCite Data Class
Description
A class for managing metadata associated with occCite
queries and data manipulation.
Slots
userQueryTypeA vector of type character specifying whether the
user made their original taxonomic query based on a vector of taxon names
or a phylogeny.
userSpecTaxonomyA vector of type character that presents a
list of taxonomic sources for cleaning taxonomy of queries. This can be
user-specified or default.
cleanedTaxonomyA data frame with containing input taxon names, the
closest match according to taxize::gnr_resolve, and a list of
taxonomic data sources that contain the matching name, generated
by studyTaxonList.
occSourcesA vector of class "character" containing a list of
occurrence data sources, generated when passing a occCiteData
object through occQuery.
occCiteSearchDateThe date on which the occurrence search query
was conducted via occCite.
occResultsThe results of an occQuery search, stored
as a named list, each of the items named after a searched taxon and
containing a data frame with occurrence information.
occCite documentation built on Nov. 2, 2024, 1:11 a.m.
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| occCiteData-class | R Documentation |
occCite Data Class
Description
A class for managing metadata associated with occCite queries and data manipulation.
Slots
userQueryTypeA vector of type character specifying whether the user made their original taxonomic query based on a vector of taxon names or a phylogeny.
userSpecTaxonomyA vector of type character that presents a list of taxonomic sources for cleaning taxonomy of queries. This can be user-specified or default.
cleanedTaxonomyA data frame with containing input taxon names, the closest match according to
taxize::gnr_resolve, and a list of taxonomic data sources that contain the matching name, generated bystudyTaxonList.occSourcesA vector of class "character" containing a list of occurrence data sources, generated when passing a
occCiteDataobject throughoccQuery.occCiteSearchDateThe date on which the occurrence search query was conducted via occCite.
occResultsThe results of an
occQuerysearch, stored as a named list, each of the items named after a searched taxon and containing a data frame with occurrence information.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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