compare_tibbles_uniprot: Compare Input and Updated Tibbles

In oglcnac: Processing and Analysis of 'O-GlcNAcAtlas' Data

Compare Input and Updated Tibbles

Description

This function compares the original input tibble and the updated tibble, identifying and reporting any changes in the specified columns ('entry_name', 'protein_name', 'gene_name').

Usage

compare_tibbles_uniprot(
  original_tibble,
  updated_tibble,
  entry_name_col = "entry_name",
  protein_name_col = "protein_name",
  gene_name_col = "gene_name"
)

Arguments

original_tibble	The original tibble before processing.
updated_tibble	The tibble returned after processing.
entry_name_col	The column name for entry names (default: "entry_name").
protein_name_col	The column name for protein names (default: "protein_name").
gene_name_col	The column name for gene names (default: "gene_name").

Value

None. Prints the differences between the tibbles.

Examples

# Example usage:

# Original input tibble
input_data <- tibble::tibble(
  id = c(1, 2),
  species = c("mouse", "rat"),
  sample_type = c("brain", "liver"),
  accession = c("O88737", "Q9R064"),
  accession_source = c("UniProt", "UniProt")
)

# Process the tibble (this will add the entry_name, protein_name, and gene_name)
processed_data <- process_tibble_uniprot(input_data)

# Compare the original and processed tibbles
compare_tibbles_uniprot(input_data, processed_data)

oglcnac documentation built on April 3, 2025, 6:16 p.m.