beissinger_data: Chicken Genotype Data

In ohtadstats: Tomoka Ohta D Statistics

Description

This file is a matrix of genotypes from 96 chickens encompassing 5 breeds, genotyped as part of the Synbreed Project. Individuals are in rows. Marker genotypes are in columns, coded as 0, 1, and 2. Row names are a breed index so all rows named "1" are from breed 1, all rows named "2" are from breed 2, and so on. Column names are marker names. These data are a subset of the data used by Beissinger et al. (2016). The full dataset is hosted on Figshare at the which can be at the link below.

Usage

data(beissinger_data)

Format

A matrix with 1417 rows and 100 columns.

Source

(https://figshare.com/articles/Synbreed_Biodiversity_Panel_Genotypes/1497961)

References

Beissinger et al. (2016) Heredity. (https://www.nature.com/articles/hdy201581)

ohtadstats documentation built on Nov. 15, 2019, 5:11 p.m.