omics: '--omics' Data Analysis Toolbox

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A collection of functions to analyse '--omics' datasets such as DNA methylation and gene expression profiles.

Author
Gianluca Campanella [aut, cre]
Date of publication
2016-11-27 22:43:22
Maintainer
Gianluca Campanella <gianluca@campanella.org>
License
GPL (>= 2)
Version
0.1-5

View on CRAN

Man pages

cpma
Cross Phenotype Meta-Analysis
mlm
Multiple Linear Models
mlmer
Multiple Linear Mixed-Effects Models
na.count
Count Missing Values
pqq
Quantile-Quantile Plot for p-values
ranef.ranks
Extract Random Effect Rank Distributions
ranks.heatmap
Plot Random Effect Rank Distributions
re.match
Pattern Matching and Extraction
setutils
Set Operations on Multiple Vectors
var.components
Extract Variance Components

Files in this package

omics
omics/inst
omics/inst/NEWS.Rd
omics/tests
omics/tests/testthat.R
omics/tests/testthat
omics/tests/testthat/test-mlm.R
omics/tests/testthat/test-mlmer.R
omics/NAMESPACE
omics/R
omics/R/setutils.R
omics/R/utils.R
omics/R/mlm.R
omics/R/mlmer.R
omics/R/pqq.R
omics/R/private.R
omics/R/cpma.R
omics/MD5
omics/DESCRIPTION
omics/man
omics/man/cpma.Rd
omics/man/ranks.heatmap.Rd
omics/man/mlmer.Rd
omics/man/pqq.Rd
omics/man/mlm.Rd
omics/man/setutils.Rd
omics/man/na.count.Rd
omics/man/var.components.Rd
omics/man/ranef.ranks.Rd
omics/man/re.match.Rd