omopr_init: Initialise connection to an 'OMOP' 'CDM' database and get...

In omopr: OMOP CDM Databases using the Tidyverse

Description

This function checks a connection to an 'OMOP' 'CDM' database and creates and returns a list of lazy 'dbplyr' table references corresponding to the available 'CDM' tables.

Usage

omopr_init(con, schema = NULL)

Arguments

con	A database connection, such as returned by the function dbConnect.
schema	Optional string name of a database schema in which the 'OMOP' 'CDM' tables are stored. Potential examples include "public", "dbo", "omop", "cdm", "data", etc.

Value

A named list with elements corresponding to dbplyr lazy tibble references.

See Also

concept_names, row_counts

Examples

# con = DBI::dbConnect(RPostgres::Postgres(), dbname = "omopdb")
con = omopr:::dummy_con() # dummy connection to allow example to run

tRefs = omopr_init(con)
tRefs[["person"]]
row_counts(tRefs)

omopr documentation built on July 1, 2020, 8:03 p.m.