ontologyIndex: Functions for Reading Ontologies into R

Functions for reading ontologies into R as lists and manipulating sets of ontological terms - 'ontologyX: A suite of R packages for working with ontological data', Greene et al 2017 <doi:10.1093/bioinformatics/btw763>.

Install the latest version of this package by entering the following in R:
install.packages("ontologyIndex")
AuthorDaniel Greene <dg333@cam.ac.uk>
Date of publication2017-02-06 14:21:31
MaintainerDaniel Greene <dg333@cam.ac.uk>
LicenseGPL (>= 2)
Version2.4

View on CRAN

Functions

check Man page
exclude_descendants Man page
get_ancestors Man page
get_descendants Man page
get_OBO Man page
get_ontology Man page
get_relation_names Man page
get_term_descendancy_matrix Man page
get_term_frequencies Man page
get_term_info_content Man page
get_term_property Man page
go Man page
hpo Man page
intersection_with_descendants Man page
minimal_set Man page
mpo Man page
ontology_index Man page
ontologyIndex Man page
ontologyIndex-package Man page
print.ontology_index Man page
propagate_relations Man page
prune_descendants Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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