ontologyIndex: Functions for Reading Ontologies into R

Functions for reading ontologies into R as lists and manipulating sets of ontological terms - 'ontologyX: A suite of R packages for working with ontological data', Greene et al 2017 <doi:10.1093/bioinformatics/btw763>.

AuthorDaniel Greene <dg333@cam.ac.uk>
Date of publication2017-02-06 14:21:31
MaintainerDaniel Greene <dg333@cam.ac.uk>
LicenseGPL (>= 2)
Version2.4

View on CRAN

Functions

check Man page
exclude_descendants Man page
get_ancestors Man page
get_descendants Man page
get_OBO Man page
get_ontology Man page
get_relation_names Man page
get_term_descendancy_matrix Man page
get_term_frequencies Man page
get_term_info_content Man page
get_term_property Man page
go Man page
hpo Man page
intersection_with_descendants Man page
minimal_set Man page
mpo Man page
ontology_index Man page
ontologyIndex Man page
ontologyIndex-package Man page
print.ontology_index Man page
propagate_relations Man page
prune_descendants Man page

Files

ontologyIndex
ontologyIndex/inst
ontologyIndex/inst/CITATION
ontologyIndex/inst/doc
ontologyIndex/inst/doc/intro-to-ontologyX.html
ontologyIndex/inst/doc/reading-ontologies.html
ontologyIndex/inst/doc/reading-ontologies.R
ontologyIndex/inst/doc/reading-ontologies.Rmd
ontologyIndex/inst/doc/intro-to-ontologyX.Rmd
ontologyIndex/inst/doc/intro-to-ontologyX.R
ontologyIndex/NAMESPACE
ontologyIndex/NEWS.md
ontologyIndex/data
ontologyIndex/data/mpo.RData
ontologyIndex/data/hpo.RData
ontologyIndex/data/datalist
ontologyIndex/data/go.RData
ontologyIndex/R
ontologyIndex/R/sets.R ontologyIndex/R/generic.R ontologyIndex/R/data.R ontologyIndex/R/descendants.R
ontologyIndex/vignettes
ontologyIndex/vignettes/reading-ontologies.Rmd
ontologyIndex/vignettes/intro-to-ontologyX.Rmd
ontologyIndex/MD5
ontologyIndex/build
ontologyIndex/build/vignette.rds
ontologyIndex/DESCRIPTION
ontologyIndex/man
ontologyIndex/man/get_ancestors.Rd ontologyIndex/man/intersection_with_descendants.Rd ontologyIndex/man/hpo.Rd ontologyIndex/man/minimal_set.Rd ontologyIndex/man/get_term_property.Rd ontologyIndex/man/get_relation_names.Rd ontologyIndex/man/prune_descendants.Rd ontologyIndex/man/ontology_index.Rd ontologyIndex/man/get_term_info_content.Rd ontologyIndex/man/propagate_relations.Rd ontologyIndex/man/go.Rd ontologyIndex/man/ontologyIndex-package.Rd ontologyIndex/man/mpo.Rd ontologyIndex/man/check.Rd ontologyIndex/man/get_ontology.Rd ontologyIndex/man/print.ontology_index.Rd ontologyIndex/man/get_descendants.Rd ontologyIndex/man/exclude_descendants.Rd ontologyIndex/man/get_term_frequencies.Rd ontologyIndex/man/get_term_descendancy_matrix.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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All documentation is copyright its authors; we didn't write any of that.