Man pages for ontologyIndex
Reading Ontologies into R
| as.data.frame.ontology_index | Case 'ontology_index' object to 'data.frame' |
| check | Check an ontology index object |
| exclude_descendants | Exclude terms descending from any in a given set of root... |
| get_ancestors | Get set of terms containing all ancestors of terms in a given... |
| get_descendants | Get set of terms containing all descendants of terms in a... |
| get_ontology | Read ontology from OBO file into R |
| get_relation_names | Get names of relations used in OBO file |
| get_term_descendancy_matrix | Get logical descendancy matrix for set of terms |
| get_term_frequencies | Get frequency of each term in a set of phenotypes |
| get_term_info_content | Get information content of each term in a set of phenotypes |
| get_term_property | Get property of individual ontological term |
| go | GO index |
| hpo | HPO index |
| intersection_with_descendants | Intersect a set of terms with the descendants of a given set... |
| minimal_set | Remove redundant/implied terms from a set of terms |
| mpo | MPO index |
| ontology_index | Create 'ontology_index' object from vectors and lists of term... |
| ontologyIndex-package | Functions for Reading Ontologies into R |
| print.ontology_index | Print 'ontology_index' object |
| propagate_relations | Select terms by propagating relations from a set of terms |
| prune_descendants | Exclude terms descending from a given set of roots but... |
