API for ontophylo
Ontology-Informed Phylogenetic Comparative Analyses
| Global functions | |
|---|---|
| HAO | Man page |
| KDE_unnorm_trunc_Markov | Man page |
| KDE_unnormalized_scalar_Markov_kernel | Man page Source code |
| MultiScale.simmap | Man page Source code |
| RAC_query | Man page Source code |
| add_noise_MD | Man page Source code |
| add_pseudodata | Man page Source code |
| anat_plot | Man page Source code |
| color.bar | Man page Source code |
| derivative_KDE | Man page Source code |
| discr_Simmap | Man page Source code |
| discr_Simmap_all | Man page Source code |
| edge_profiles4plotting | Man page Source code |
| edgeplot | Man page Source code |
| estimate_band_W | Man page Source code |
| estimate_edge_KDE | Man page Source code |
| estimate_edge_KDE_Markov_kernel_unnorm | Man page Source code |
| get_descendants_chars | Man page Source code |
| get_path_edges | Man page Source code |
| get_rough_state_cols | Man page Source code |
| get_state | Man page Source code |
| get_states_path | Man page Source code |
| get_vector_ids_list | Man page Source code |
| get_vector_ids_per_term | Man page Source code |
| hym_annot | Man page |
| hym_graph | Man page |
| hym_hm | Man page |
| hym_img | Man page |
| hym_kde | Man page |
| hym_matrix | Man page |
| hym_nhpp | Man page |
| hym_stm | Man page |
| hym_stm_amalg | Man page |
| hym_stm_mds | Man page |
| hym_tree | Man page |
| integrate_edge_KDE | Man page Source code |
| join_edges | Man page Source code |
| list2edges | Man page Source code |
| loess_smoothing_KDE | Man page Source code |
| make_colors | Man page Source code |
| make_colors_relative_scale | Man page Source code |
| make_contMap_KDE | Man page Source code |
| make_data_NHPP_KDE_Markov_kernel | Man page Source code |
| make_data_NHPP_over_edge_MarkovKDE | Man page Source code |
| make_pic | Man page Source code |
| make_postPois_KDE | Man page Source code |
| mds_plot | Man page Source code |
| merge_branch_cat | Man page Source code |
| merge_tree_cat | Man page Source code |
| merge_tree_cat_list | Man page Source code |
| normalize_KDE | Man page Source code |
| pNHPP | Man page Source code |
| paramo | Man page Source code |
| paramo.list | Man page Source code |
| path_hamming | Man page Source code |
| path_hamming_over_all_edges | Man page Source code |
| path_hamming_over_trees_KDE | Man page Source code |
| posterior_lambda_KDE | Man page Source code |
| posterior_lambda_KDE_Distr | Man page Source code |
| read_Simmap_Rev | Man page Source code |
| stack2 | Man page Source code |
| stack_stm | Man page Source code |
