get_rough_state_cols: Multiple character state colors
In ontophylo: Ontology-Informed Phylogenetic Comparative Analyses
View source: R/paramo_functions.R
get_rough_state_cols R Documentation
Multiple character state colors
Description
Get state colors for ploting stochastic character maps when there many states.
Usage
get_rough_state_cols(tree)
Arguments
tree
simmap object.
Value
A character vector with colors associated with state names.
Author(s)
Sergei Tarasov
Examples
data("hym_stm_amalg")
# Get one sample of stochastic map from head.
tree <- hym_stm_amalg$head[[5]]
# Plot one amalgamated stochastic map from head.
phytools::plotSimmap(tree, get_rough_state_cols(tree),
lwd = 3, pts = FALSE,ftype = "off")
ontophylo documentation built on May 29, 2024, 9:57 a.m.
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View source: R/paramo_functions.R
| get_rough_state_cols | R Documentation |
Multiple character state colors
Description
Get state colors for ploting stochastic character maps when there many states.
Usage
get_rough_state_cols(tree)
Arguments
tree |
simmap object. |
Value
A character vector with colors associated with state names.
Author(s)
Sergei Tarasov
Examples
data("hym_stm_amalg")
# Get one sample of stochastic map from head.
tree <- hym_stm_amalg$head[[5]]
# Plot one amalgamated stochastic map from head.
phytools::plotSimmap(tree, get_rough_state_cols(tree),
lwd = 3, pts = FALSE,ftype = "off")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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