Files in ontophylo
Ontology-Informed Phylogenetic Comparative Analyses
MD5
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/paramo_functions.R
R/graphics_functions.R
R/nhpp_functions.R
R/ontophylo_data.R
R/morphospace_functions.R
build/partial.rdb
tests/testthat.R
tests/testdata/stm_test.RDS
tests/testdata/graph_tb_test.RDS
tests/testdata/stm_amalg_test.RDS
tests/testdata/hym_tree.RDS
tests/testdata/ph_test.RDS
tests/testdata/stm_kde_test.RDS
tests/testthat/test_merge_tree_cat_list.R
tests/testthat/test_make_data_NHPP_KDE_Markov_kernel.R
tests/testthat/test_RAC_query.R
tests/testthat/test_get_state.R
tests/testthat/test_discr_Simmap_all.R
tests/testthat/test_Read_Simmap_Rev.R
tests/testthat/test_path_hamming_over_all_edges.R
tests/testthat/test_path_hamming.R
tests/testthat/test_get_path_edges.R
tests/testthat/test_color.bar.R
tests/testthat/test_get_states_path.R
tests/testthat/test_make_contMap_KDE.R
tests/testthat/test_MultiScale.simmap.R
tests/testthat/test_add_noise_MD.R
tests/testthat/test_integrate_edge_KDE.R
tests/testthat/test_posterior_lambda_KDE.R
tests/testthat/test_list2edges.R
tests/testthat/test_add_pseudodata.R
tests/testthat/test_derivative_KDE.R
tests/testthat/test_estimate_band_W.R
tests/testthat/test_stack2.R
tests/testthat/test_make_postPois_KDE.R
tests/testthat/test_make_data_NHPP_over_edge_MarkovKDE.R
tests/testthat/test_get_vector_ids_per_term.R
tests/testthat/test_make_colors.R
tests/testthat/test_KDE_unnormalized_scalar_Markov_kernel.R
tests/testthat/test_mds_plot.R
tests/testthat/test_KDE_unnorm_trunc_Markov.R
tests/testthat/test_normalize_KDE.R
tests/testthat/test_edgeplot.R
tests/testthat/test_get_vector_ids_list.R
tests/testthat/test_make_pic.R
tests/testthat/test_discr_Simmap.R
tests/testthat/test_estimate_edge_KDE_Markov_kernel_unnorm.R
tests/testthat/test_make_colors_relative_scale.R
tests/testthat/test_pNHPP.R
tests/testthat/test_join_edges.R
tests/testthat/test_paramo.R
tests/testthat/test_merge_tree_cat.R
tests/testthat/test_posterior_lambda_KDE_Distr.R
tests/testthat/test_get_rough_state_cols.R
tests/testthat/test_estimate_edge_KDE.R
tests/testthat/test_path_hamming_over_trees_KDE.R
tests/testthat/test_anat_plot.R
tests/testthat/test_loess_smoothing_KDE.R
tests/testthat/test_paramo.list.R
tests/testthat/test_edge_profiles4plotting.R
tests/testthat/test_get_descendants_chars.R
tests/testthat/test_merge_branch_cat.R
tests/testthat/test_stack_stm.R
data/hym_stm_amalg.rda
data/hym_graph.rda
data/hym_annot.rda
data/hym_nhpp.rda
data/hym_stm_mds.rda
data/hym_img.rda
data/hym_kde.rda
data/HAO.rda
data/hym_stm.rda
data/hym_matrix.rda
data/hym_hm.rda
data/hym_tree.rda
man/hym_kde.Rd
man/get_rough_state_cols.Rd
man/estimate_edge_KDE.Rd
man/KDE_unnormalized_scalar_Markov_kernel.Rd
man/make_colors_relative_scale.Rd
man/posterior_lambda_KDE.Rd
man/get_state.Rd
man/MultiScale.simmap.Rd
man/estimate_edge_KDE_Markov_kernel_unnorm.Rd
man/RAC_query.Rd
man/hym_graph.Rd
man/list2edges.Rd
man/read_Simmap_Rev.Rd
man/anat_plot.Rd
man/KDE_unnorm_trunc_Markov.Rd
man/get_vector_ids_list.Rd
man/get_descendants_chars.Rd
man/path_hamming_over_all_edges.Rd
man/hym_stm_amalg.Rd
man/merge_tree_cat_list.Rd
man/path_hamming.Rd
man/hym_nhpp.Rd
man/add_noise_MD.Rd
man/make_data_NHPP_KDE_Markov_kernel.Rd
man/add_pseudodata.Rd
man/estimate_band_W.Rd
man/get_vector_ids_per_term.Rd
man/merge_branch_cat.Rd
man/make_contMap_KDE.Rd
man/derivative_KDE.Rd
man/hym_hm.Rd
man/get_path_edges.Rd
man/stack_stm.Rd
man/paramo.Rd
man/edge_profiles4plotting.Rd
man/edgeplot.Rd
man/pNHPP.Rd
man/hym_annot.Rd
man/get_states_path.Rd
man/hym_matrix.Rd
man/join_edges.Rd
man/discr_Simmap.Rd
man/hym_img.Rd
man/loess_smoothing_KDE.Rd
man/hym_stm.Rd
man/HAO.Rd
man/posterior_lambda_KDE_Distr.Rd
man/color.bar.Rd
man/integrate_edge_KDE.Rd
man/make_data_NHPP_over_edge_MarkovKDE.Rd
man/make_postPois_KDE.Rd
man/hym_tree.Rd
man/merge_tree_cat.Rd
man/path_hamming_over_trees_KDE.Rd
man/normalize_KDE.Rd
man/mds_plot.Rd
man/paramo.list.Rd
man/make_pic.Rd
man/discr_Simmap_all.Rd
man/make_colors.Rd
man/hym_stm_mds.Rd
man/stack2.Rd
