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opentimsr: An Open-Source Loader for Bruker's timsTOF Data Files
Reads raw data from Bruker's timsTOF mass spectrometers, stored in analysis.tdf and analysis.tdf_bin files inside .d folders. Frames can be selected by number or by retention time, and each peak is reported with its scan, time-of-flight index, intensity, mass-to-charge ratio and inverse ion mobility. Mass-to-charge ratios and ion mobilities are computed with built-in open-source calibration, or optionally with Bruker's proprietary library. See Łącki et al. (2021) <doi:10.1021/acs.jproteome.0c00962>.
Getting started
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Package details |
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| Author | Michał Piotr Startek [aut, cph] (ORCID: <https://orcid.org/0000-0001-5227-3447>), Mateusz Krzysztof Łącki [aut, cre, cph] (ORCID: <https://orcid.org/0000-0001-7415-4748>), mandreyel [ctb, cph] (Author and copyright holder of the bundled 'mio' library (https://github.com/mandreyel/mio)) |
| Maintainer | Mateusz Krzysztof Łącki <matteo.lacki@gmail.com> |
| License | MIT + file LICENSE |
| Version | 1.2.3 |
| URL | https://github.com/michalsta/opentims |
| Package repository | View on CRAN |
| Installation |
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