API for optCluster
Determine Optimal Clustering Algorithm and Number of Clusters
| Global functions | |
|---|---|
| BHI | Source code |
| BSI | Source code |
| aggregPlot | Man page Source code |
| annotationListToMatrix | Source code |
| arabid | Man page |
| assignGenes | Source code |
| cl.ID | Source code |
| clValid-class | Man page |
| clValid2 | Source code |
| clValidObj | Man page |
| clusterMethods | Man page |
| clusterMethods,clValid-method | Man page |
| clusterResults | Man page |
| clusterResults,optCluster-method | Man page |
| clusters | Man page |
| clusters,clValid-method | Man page |
| connectivity | Source code |
| dist.fn | Source code |
| dunn | Source code |
| getCellResource | Source code |
| getCells | Source code |
| getClValid | Man page |
| getClValid,optCluster-method | Man page |
| getDataset | Man page |
| getDataset,optCluster-method | Man page |
| getRankAggreg | Man page |
| getRankAggreg,optCluster-method | Man page |
| getRanksWeights | Source code |
| getResource | Source code |
| matchGO | Source code |
| mbCountVal | Source code |
| measNames | Man page |
| measNames,clValid-method | Man page |
| measureNames | Man page |
| measureNames,optCluster-method | Man page |
| measures | Man page |
| measures,clValid-method | Man page |
| methodNames | Man page |
| methodNames,optCluster-method | Man page |
| methodRanks | Man page |
| methodRanks,optCluster-method | Man page |
| mysilhouette | Source code |
| nClusters | Man page |
| nClusters,clValid-method | Man page |
| optAssign | Man page |
| optAssign,optCluster-method | Man page |
| optCluster | Man page Source code |
| optCluster-class | Man page |
| optClusterObj | Man page |
| optHeatmap | Man page Source code |
| optimalScores | Man page |
| optimalScores,optCluster-method | Man page |
| plot,clValid,missing-method | Man page |
| plot.sota | Source code |
| print,clValid-method | Man page |
| print,optCluster-method | Man page |
| print.sota | Source code |
| readAnnotationFile | Source code |
| repRankAggreg | Man page Source code |
| scoreRanks | Man page |
| scoreRanks,optCluster-method | Man page |
| show,clValid-method | Man page |
| show,optCluster-method | Man page |
| sota | Source code |
| sota.init | Source code |
| splitNode | Source code |
| stability | Source code |
| summary,clValid-method | Man page |
| summary,optCluster-method | Man page |
| topMethod | Man page |
| topMethod,optCluster-method | Man page |
| trainLeaves | Source code |
| vClusters2 | Source code |
| valPlot | Man page Source code |
| valScores | Man page |
| valScores,optCluster-method | Man page |
