oro.dicom: Rigorous - DICOM Input / Output
Version 0.5.0

Data input/output functions for data that conform to the Digital Imaging and Communications in Medicine (DICOM) standard, part of the Rigorous Analytics bundle.

Browse man pages Browse package API and functions Browse package files

AuthorBrandon Whitcher [aut, cre]
Date of publication2015-04-20 11:51:37
MaintainerBrandon Whitcher <bwhitcher@gmail.com>
LicenseBSD_3_clause + file LICENSE
Version0.5.0
URL http://rig.oro.us.com http://rigorousanalytics.blogspot.com
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("oro.dicom")

Man pages

create3D: Create Arrays from DICOM Headers/Images
dec2base: Convert Decimal to Base N Number in String
dicom2analyze: Convert DICOM Header to Analyze
dicom2nifti: Convert DICOM Header to NIfTI
dicom.dic: Lookup Tables for DICOM Header Information
dicomTable: Construct Data Frame from DICOM Headers
extractHeader: Extract Single Field from DICOM Headers
getOrientation: Convert Direction Cosines to Anatomical Direction
header2matrix: Converts DICOM Header Field to a Matrix
is.axial: Orthogonal Planes
matchHeader: Match String to DICOM Header Field
nextHeader: Check String Against DICOM Header Field to Produce Error...
parsePixelData: Parse DICOM Pixel or Spectroscopy Data
readDICOM: Read All DICOM Files in a Directory
readDICOMFile: Read Single DICOM File
str2time: Convert DICOM Time/Date Entry
swapDimension: Reslice Data Volume Using DICOM Header Fields
writeHeader: Write DICOM Table to ASCII File

Functions

create3D Man page Source code
create4D Man page Source code
dec2base Man page Source code
dec2hex Man page Source code
dicom.VR Man page
dicom.dic Man page
dicom.dic.thompson Man page
dicom2analyze Man page Source code
dicom2nifti Man page Source code
dicomTable Man page Source code
extractHeader Man page Source code
getOrientation Man page Source code
header2matrix Man page Source code
is.axial Man page Source code
is.coronal Man page Source code
is.sagittal Man page Source code
matchHeader Man page Source code
nextHeader Man page Source code
onAttach Source code
orthogonal-planes Man page
parseDICOMHeader Man page Source code
parsePixelData Man page Source code
parseSpectroscopyData Man page Source code
rawToCharWithEmbeddedNuls Source code
readDICOM Man page Source code
readDICOMFile Man page Source code
str2date Man page Source code
str2time Man page Source code
swapDimension Man page Source code
writeHeader Man page Source code

Files

inst
inst/CITATION
inst/jpeg
inst/jpeg/cervicalKyphosis.dcm
inst/sphere3
inst/sphere3/sphere3.02.dcm
inst/sphere3/sphere3.28.dcm
inst/sphere3/sphere3.14.dcm
inst/sphere3/sphere3.18.dcm
inst/sphere3/sphere3.20.dcm
inst/sphere3/sphere3.08.dcm
inst/sphere3/sphere3.00.dcm
inst/sphere3/sphere3.19.dcm
inst/sphere3/sphere3.21.dcm
inst/sphere3/sphere3.13.dcm
inst/sphere3/sphere3.04.dcm
inst/sphere3/sphere3.23.dcm
inst/sphere3/sphere3.22.dcm
inst/sphere3/sphere3.29.dcm
inst/sphere3/sphere3.11.dcm
inst/sphere3/sphere3.10.dcm
inst/sphere3/sphere3.01.dcm
inst/sphere3/sphere3.09.dcm
inst/sphere3/sphere3.31.dcm
inst/sphere3/sphere3.12.dcm
inst/sphere3/sphere3.05.dcm
inst/sphere3/sphere3.30.dcm
inst/sphere3/sphere3.25.dcm
inst/sphere3/sphere3.16.dcm
inst/sphere3/sphere3.24.dcm
inst/sphere3/sphere3.03.dcm
inst/sphere3/sphere3.26.dcm
inst/sphere3/sphere3.15.dcm
inst/sphere3/sphere3.07.dcm
inst/sphere3/sphere3.27.dcm
inst/sphere3/sphere3.17.dcm
inst/sphere3/sphere3.06.dcm
inst/doc
inst/doc/dicom.R
inst/doc/dicom.pdf
inst/doc/dicom.Rnw
inst/dcm
inst/dcm/Abdo.dcm
inst/dcm/Spine1.dcm
inst/dcm/MR-sonata-3D-as-Tile.dcm
inst/hk-40
inst/hk-40/hk40.RData
tests
tests/Examples
tests/Examples/oro.dicom-Ex.Rout.save
tests/testthat.R
tests/testthat
tests/testthat/test_convert.R
tests/testthat/test_readDICOM.R
tests/testthat/test_header.R
tests/testthat/test_orientation.R
NAMESPACE
data
data/dicom.VR.rda
data/dicom.dic.rda
data/dicom.dic.csv.xz
data/dicom.VR.csv.gz
data/dicom.dic.thompson.csv.bz2
R
R/convert.R
R/recursive.R
R/dicom.R
R/header.R
R/create.R
R/dicom2nifti.R
R/dec2base.R
R/oro.dicom-package.R
R/orientation.R
R/zzz.R
vignettes
vignettes/dicom.bib
vignettes/dicom.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/readDICOM.Rd
man/dec2base.Rd
man/readDICOMFile.Rd
man/create3D.Rd
man/matchHeader.Rd
man/writeHeader.Rd
man/dicomTable.Rd
man/dicom2analyze.Rd
man/swapDimension.Rd
man/header2matrix.Rd
man/parsePixelData.Rd
man/nextHeader.Rd
man/extractHeader.Rd
man/dicom2nifti.Rd
man/getOrientation.Rd
man/dicom.dic.Rd
man/str2time.Rd
man/is.axial.Rd
LICENSE
oro.dicom documentation built on May 20, 2017, 4:50 a.m.