Man pages for otargen
Access Open Target Genetics
| chemblQuery | Retrieve ChEMBL data for a specified gene and disease. |
| clinvarQuery | Retrieve ClinVar data for a specified gene and disease. |
| colocalisationsForGene | Retrieves Colocalisation Statistics for a Given Gene |
| compGenomicsQuery | Retrieve Comparative Genomics data for a specified gene. |
| geneInfo | Retrieve gene summary information. |
| genesForVariant | Retrieves variant-surrounding genes with calculated... |
| geneticConstraintQuery | Retrieve Genetic Constraint data for a specified gene. |
| getLociGenes | Retrieve summary information of the genes in a locus |
| gwasColocalisation | Retrieve calculated GWAS colocalisation data |
| gwasColocalisationForRegion | Retrieve GWAS colocalisation data for a genomic region . |
| gwasCredibleSet | Retrieve GWAS credible set data |
| gwasRegional | Retrieve GWAS summary statistics for a genomic region. |
| indexVariantsAndStudiesForTagVariant | Retrieve population-level summary GWAS statistics. |
| knownDrugsQuery | Retrieve Known Drugs data for a specified gene. |
| manhattan | Retrieve GWAS summary statistics to create a Manhattan plot |
| mousePhenotypesQuery | Retrieve Mouse Phenotypes data for a specified gene. |
| overlapInfoForStudy | Retrieves overlap info for a study and a list of studies |
| pheWAS | Retrieve PheWAS (Phenome Wide Association Studies) data for a... |
| plot_coloc | Scatter plot of colocalisations for gene and reported traits. |
| plot_l2g | Radar plot for L2G partial scores from... |
| plot_manhattan | Plot results from 'manhattan()' |
| plot_phewas | Plot 'PheWAS()' results. |
| qtlColocalisationVariantQuery | Retrieve QTL colocalisation results of a variant |
| qtlCredibleSet | Retrieve calculated QTL summary statistics for credible... |
| run_custom_query | Running custom GraphQL queries |
| studiesAndLeadVariantsForGeneByL2G | Retrieve "locus-to-gene" (L2G) model summary data for a gene. |
| studyInfo | Retrieve study summary information. |
| studyLocus2GeneTable | Retrieve the locus-to-gene (L2G) data table for loci genes. |
| studyVariants | Retrieves all variants for a study. |
| tagVariantsAndStudiesForIndexVariant | Retrieves tag variants and studies for a given index variant. |
| topOverlappedStudies | Retrieve top studies having overlap in identified loci. |
| variantInfo | Retrieves information about a variant. |
