clinVarQuery: Retrieve ClinVar data for a specified gene and disease.
In otargen: Access Open Target

clinVarQuery

R Documentation

Retrieve ClinVar data for a specified gene and disease.

Description

This function queries the Open Targets GraphQL API to retrieve ClinVar evidence data for a specified gene and disease.

Usage

clinVarQuery(ensemblId, efoId, cursor = NULL, size = 10)

Arguments

`ensemblId`	Character: ENSEMBL ID of the target gene (e.g., "ENSG00000080815").
`efoId`	Character: EFO ID of the target disease (e.g., "MONDO_0004975").
`cursor`	Character: Cursor for pagination (default: NULL).
`size`	Integer: Number of records to retrieve (default: 10).

Value

Returns a tibble containing ClinVar evidence data for the specified gene and disease.

Examples

## Not run: 
result <- clinVarQuery(ensemblId = "ENSG00000080815", efoId = 
"MONDO_0004975", size = 10)
result <- clinVarQuery(ensemblId = "ENSG00000080815", efoId = 
"MONDO_0004975", cursor = NULL, size = 10)

## End(Not run)

otargen documentation built on Aug. 9, 2025, 1:08 a.m.