plot_manhattan: Plot results from 'manhattan()'

In otargen: Access Open Target Genetics

Plot results from manhattan()

Description

This function generates a Manhattan plot using the statistical summary data obtained from the manhattan() function. Top 3 genes (based on p-value) are annotated per chromosome.

Usage

plot_manhattan(data)

Arguments

data

Data frame containing the necessary columns from manhattan() output for plotting: - variant_position: Variant position - variant_chromosome: Variant chromosome - pval: P-value - variant_id: Variant ID - best_locus2genes_score: Best locus2genes score - best_locus2genes_gene_symbol: Best locus2genes gene symbol

Value

A Manhattan plot visualizing the GWAS results.

Examples

## Not run: 
p <- manhattan(study_id = "GCST003044") %>% plot_manhattan()

p

## End(Not run)

otargen documentation built on Sept. 30, 2024, 9:43 a.m.