pAnalysis: Benchmarking and Rescaling R2 using Noise Percentile Analysis

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Provides the tools needed to benchmark the R2 value corresponding to a certain acceptable noise level while also providing a rescaling function based on that noise level yielding a new value of R2 we refer to as R2k which is independent of both the number of degrees of freedom and the noise distribution function.

Author
Joseph G Kreke, PhD; Harris, Inc. Sangeet Khemlani, PhD; Naval Research Laboratory. Greg Trafton, PhD; Naval Research Laboratory.
Date of publication
2016-01-19 23:47:42
Maintainer
Joseph G Kreke <jkreke2@gmail.com>
License
GPL-2
Version
2.0

View on CRAN

Man pages

cap1
cap1
pAnalysis-package
\Sexpr[results=rd,stage=build]{tools:::Rd_package_title("pAnalysis")}
pcdfs
R2 values with corresponding probability density and...
plotcdf
Plot several Cumulative Density Functions
plotpdf
Plot Several Probability Density Functions
plotR2Equiv
Plotting Equivalent R2s across a range of degrees of freedom.
plotR2k
Plot R2k for a single measured R2 and a single noise...
plotR2p
Plot several noise baselines (R2p)
R2
R-squared
R2k
Conversion of standard R2 to a noise/dof-independent value
R2p
Calculation of baseline noise level (R2p) at a single value...
R2pTable
Creates a table R2p values for combinations of degrees of...

Files in this package

pAnalysis
pAnalysis/NAMESPACE
pAnalysis/R
pAnalysis/R/Percentile_Analysis_Functions_v2.R
pAnalysis/MD5
pAnalysis/build
pAnalysis/build/partial.rdb
pAnalysis/DESCRIPTION
pAnalysis/man
pAnalysis/man/pcdfs.Rd
pAnalysis/man/cap1.Rd
pAnalysis/man/plotR2p.Rd
pAnalysis/man/R2p.Rd
pAnalysis/man/pAnalysis-package.Rd
pAnalysis/man/R2.Rd
pAnalysis/man/plotpdf.Rd
pAnalysis/man/plotcdf.Rd
pAnalysis/man/R2pTable.Rd
pAnalysis/man/plotR2k.Rd
pAnalysis/man/plotR2Equiv.Rd
pAnalysis/man/R2k.Rd